Protein Overview: chp-PA

General Information:
Name(s) found:	chp-PA / FBpp0085139 [FlyBase]
Description(s) found: Found 23 descriptions. SHOW ALL	The gene chaoptic is referred to in FlyBase by the symbol Dmel\chp (CG1744, FBgn0000313). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 3R:27029904..27036452. It has the cytological map location 100B5-100B6. An electronic pipeline based on InterPro domains suggests that it has the molecular function</span>: protein binding. There is experimental evidence that it is involved in the biological process</span>: rhabdomere development; homophilic cell adhesion. 13 alleles are reported. The phenotype of these alleles is annotated with: rhabdomere. It has one annotated transcript and one annotated polypeptide. [FlyBase]
Organism:	Drosophila melanogaster
Length:	1315 amino acids
Gene Ontology:
Cellular Component:	plasma membrane [IDA][NAS]
Biological Process:	compound eye photoreceptor development [NAS] rhabdomere development [IGI] homophilic cell adhesion [IDA][NAS]
Molecular Function:	protein binding [IEA]

Sequence:

Sequence:
[PDR BLAST]
[ProtParam]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLEFFFKFG YAFLTITLMI MIWMSLARAS MFDREMEETH YPPCTYNVMC TCSKSSTDLG  60
   61 IVHCKNVPFP ALPRMVNQSK VFMLHMENTG LREIEPYFLQ STGMYRLKIS GNHLTEIPDD 120
  121 AFTGLERSLW ELILPQNDLV EIPSKSLRHL QKLRHLDLGY NHITHIQHDS FRGLEDSLQT 180
  181 LILRENCISQ LMSHSFSGLL ILETLDLSGN NLFEIDPNVF VDGMPRLTRL LLTDNILSEI 240
  241 PYDALGPLKS LRTLDISHNV IWSLSGNETY EIKASTKLNL DNLHLEYNHI EVLPPNSFKY 300
  301 FDTVNRTFFD GNPIHTLRED AFKPARIREI YMRYCGLTNI SPVAFDSLVN SLQILDLSGN 360
  361 NLTKLHHKLF NNFDVLRVIS MRDNKIKIQK PTETFNAVHY TLLKLDLSGD RNDPTNLQTL 420
  421 RNMTRMRNMR SLSISRLGSS SVGPEDFKDF GVELEDLQIT RASLSGIQSH AFKHVRGLKR 480
  481 LDFSENGISS IENDAFHEIG HSLISLKMSH GYSGSALPAE PLRHLTSLQE LDFSNNHISS 540
  541 MSDTSFHFLK NLRLLELHDN RIEQVLKGTF QGDIHSKLEE ISLRFNHLTS ISQHTFFDLE 600
  601 ALRKLHLDDN KIDKIERRAF MNLDELEYLS LRGNKINNLA DESFQNLPKL EILDMAFNQL 660
  661 PNFNFDYFDQ VGTLSNLNVN VSHNQIRQLM YNSSWSGRNE HGGMYHSNIK ILDLSHNNIS 720
  721 IIHPGYFRPA EISLTHLHLG YNSLMNTTRD VFGNMPHLQW LDLSYNWIHE LDFDAFKNTK 780
  781 QLQLVFFGHN YLSDIPQDIF KPVQGLRIVD FSHNHLRGLP DNLFYNGGME KLDVSHNMML 840
  841 KIPSSSLSSL AALTLCELHL SNNFISTIHS MDLSNKFRSL RYLDISYNYL LRIDDAVFAT 900
  901 MPKLAVLDLS HNRDLKVMDK SFMGLENSLI KLGLENISLS TVPEIRLKYL REFRLGYNEL 960
  961 PSIPQELAHN MSNLRMLDLS NNDLTNVPLM TQALPHLRRL MLSGNPITSL NNNSFDGVNE1020
 1021 DLEMLDISNF RLHYFEYGCL DSLPHLRSLK LTAYSHLEHF NIPHLLRHHY NIRQLWIEAP1080
 1081 QPFTRIVKKG SGPTQEMQTL QLGNPTDLQR EMEGHLPSKL TNITFSGPQF TNLNERILRG1140
 1141 MRSPYLYMQL FNTSLQALPP NFFKYMGRVR NISLDIRYHN RNLKKIPNPN TGAVPYLPNS1200
 1201 VFLTDLKMSH TDLNCDCDLG WVEFWQRKRR QYICSSQTWT DTVFRTFMNS PCQVYGRHNC1260
 1261 DEHDDDLRET RCENKGGQQL MEALKFDLEC GWDNANCREA AFVVVMVCVA MVFWM

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

No mass spectrometry results found for this protein.

Yeast Two-Hybrid Data

The following interactions contain this protein:

NOT SHOWING SINGLE HITS. [ Show Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Searching the YRC Public Image Repository, found results:

Currently showing to of results.

[View Search in the YRC Public Image Repository]

Searching the YRC Public Image Repository, found no results.

Ginzu Version Information

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

Gene Ontology predictions

Term	Confidence	Notes
extracellular matrix structural constituent	4.44612590443184	bayes_pls_golite062009
receptor activity	3.26307298864411	bayes_pls_golite062009
transmembrane receptor activity	3.15814977487775	bayes_pls_golite062009
signal transducer activity	2.54176035045352	bayes_pls_golite062009
molecular transducer activity	2.54176035045352	bayes_pls_golite062009
G-protein coupled receptor activity	2.0521926599024	bayes_pls_golite062009
receptor binding	1.66628371061052	bayes_pls_golite062009
transmembrane receptor protein kinase activity	1.50579173120225	bayes_pls_golite062009
transmembrane receptor protein tyrosine kinase activity	1.36671598599873	bayes_pls_golite062009
glycosaminoglycan binding	1.28988458709664	bayes_pls_golite062009
binding	1.23313855731605	bayes_pls_golite062009
extracellular matrix binding	0.907118880836251	bayes_pls_golite062009
pattern binding	0.85554194405707	bayes_pls_golite062009
protein tyrosine kinase activity	0.816936488882952	bayes_pls_golite062009
insulin-like growth factor binding	0.72018950361604	bayes_pls_golite062009
nucleic acid binding	0.710443686489925	bayes_pls_golite062009
protein binding	0.646159692466759	bayes_pls_golite062009
protein-hormone receptor activity	0.42902267001067	bayes_pls_golite062009
polysaccharide binding	0.34063289254939	bayes_pls_golite062009
enzyme regulator activity	0.154501444195573	bayes_pls_golite062009
collagen binding	0.085405748322021	bayes_pls_golite062009
growth factor binding	0.0358215683345522	bayes_pls_golite062009

No functions predicted.

Source: Reynolds et al. 2008. Manuscript submitted

#		Region(s)	Method	Confidence	Match Description
1	View Details	[1..359]	PSI-BLAST	30.0	No description for 2omvA was found.
2	View Details	[360..419]	PSI-BLAST	22.154902	No description for 2v9sA was found.
3	View Details	[420..499]	FFAS03	2.78	No description for 2z66A was found.
4	View Details	[500..646]	PSI-BLAST	41.0	No description for 2id5A was found.
5	View Details	[647..1315]	PSI-BLAST	51.30103	The molecular structure of toll-like receptor 3 ligand binding domain

Protein Overview: chp-PA

Protein Complex Data

Mass Spectrometry Data

Yeast Two-Hybrid Data

Microscopy / Localization Data

Protein Structure Data

Philius Transmembrane Prediction: