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Protein Overview: RL35A_RAT

General Information:
Name(s) found: RL35A_RAT [Swiss-Prot]
Description(s) found:
Found 27 descriptions.
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  • 60S ribosomal protein L35a OS=Rattus norvegicus GN=Rpl35a PE=3 SV=1 [Swiss-Prot]
    • Organism: Rattus norvegicus
    Length: 110 amino acids

    Gene Ontology:
    Cellular Component: mitochondrion [UNKNOWN]
    cytosol [UNKNOWN]
    ribosome [TAS]
    intracellular [IEA]
    Biological Process: ribosomal large subunit biogenesis [UNKNOWN]
    rRNA processing [UNKNOWN]
    translational elongation [UNKNOWN]
    translation [IEA]
    Molecular Function: protein binding [UNKNOWN]
    structural constituent of ribosome [TAS]
    tRNA binding [TAS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGRLWCKAI FAGYKRGLRN QREHTALLKI EGVYARDETE FYLGKRCAYV YKAKNNTVTP  60
   61 GGKPNKTRVI WGKVTRAHGN SGMVRAKFRS NLPAKAIGHR IRVMLYPSRI

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..110] PSI-BLAST 23.09691 Solution Structure of the 50S Ribosomal Protein L35AE from Pyrococcus furiosus. Northeast Structural Genomics Consortium Target PfR48.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • structural constituent of ribosome
    		•  8.74976995123472 bayes_pls_golite062009
  • structural molecule activity
    		•  8.17182185344538 bayes_pls_golite062009
  • translation initiation factor activity
    		•  2.68619850021832 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.39500449599674 bayes_pls_golite062009
  • RNA binding
    		•  2.33551163092904 bayes_pls_golite062009
  • translation regulator activity
    		•  2.20347076721097 bayes_pls_golite062009
  • translation factor activity, nucleic acid binding
    		•  2.18748808024313 bayes_pls_golite062009
  • binding
    		•  1.82018436093208 bayes_pls_golite062009
  • peptidyltransferase activity
    		•  1.25473146071242 bayes_pls_golite062009
  • ligase activity, forming carbon-oxygen bonds
    		•  0.588710983191844 bayes_pls_golite062009
  • ligase activity, forming aminoacyl-tRNA and related compounds
    		•  0.588710983191844 bayes_pls_golite062009
  • aminoacyl-tRNA ligase activity
    		•  0.587833689405549 bayes_pls_golite062009
  • ligase activity
    		•  0.179232439709325 bayes_pls_golite062009
  • protein binding
    		•  0.142220848362339 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle