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Protein Overview: SET4

General Information:
Name(s) found: SET4 / YJL105W [SGD]
Description(s) found:
Found 20 descriptions.
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  • Protein of unknown function, contains a SET domain [SGD]
    • Organism: Saccharomyces cerevisiae
    Length: 560 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: biological_process [ND]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [NCBI BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSPESLSSR HIRQGRTYTT TDKVISRSSS YSSNSSMSKD YGDHTPLSVS SAASETLPSP  60
   61 QYMPIRTFNT MPTAGPTPLH LFQNDRGIFN HHSSSGSSKT ASTNKRGIAA AVALATAATI 120
  121 PFPLKKQNQD DNSKVSVTHN ESSKENKITP SMRAEDNKPK NGCICGSSDS KDELFIQCNK 180
  181 CKTWQHKLCY AFKKSDPIKR DFVCKRCDSD TKVQVNQVKP MIFPRKMGDE RLFQFSSIVT 240
  241 TSASNTNQHQ QSVNNIEEQP KKRQLHYTAP TTENSNSIRK KLRQEKLVVS SHFLKPLLNE 300
  301 VSSSNDTEFK AITISEYKDK YVKMFIDNHY DDDWVVCSNW ESSRSADIEV RKSSNERDFG 360
  361 VFAADSCVKG ELIQEYLGKI DFQKNYQTDP NNDYRLMGTT KPKVLFHPHW PLYIDSRETG 420
  421 GLTRYIRRSC EPNVELVTVR PLDEKPRGDN DCRVKFVLRA IRDIRKGEEI SVEWQWDLRN 480
  481 PIWEIINASK DLDSLPDPDK FWLMGSIKTI LTNCDCACGY LGHNCPITKI KNFSEEFMRN 540
  541 TKESLSNKSY FNTIMHNCKP

    Protein Complex Data

      PUBLICATION TOPOLOGY COCOMPLEXED PROTEINS
    View Details Krogan NJ, et al. (2006) AME1 ARG5,6 CHL4 CTF19 CTF3 IML3 MCM16 MCM21 MCM22 NKP1 NKP2 OKP1 PRP18 SET4 YNR062C

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

      BAIT PREY HITS PUBLICATION
    View Screen CDC4 SET4 1 Unpublished Fields Lab Data
    View Screen NTA1 SET4 1 Unpublished Fields Lab Data
    View Screen MDM1 SET4 1 Unpublished Fields Lab Data

    Microscopy / Localization Data

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    No microscopy data found for this protein.

    Protein Structure Data


    [What does the above image mean?] [View Top Sequence Alignments]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..95] MSA 1.121989 View MSA. No confident structure predictions are available.
    2 View Details [96..245] PSI-BLAST 4.045757 Nuclear corepressor KAP-1 (TIF-1beta)
    3 View Details [246..560] MSA 30.180995 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  0.654291041691191 bayes_pls_golite062009
    3 No functions predicted.


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.90

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by:     Michael Riffle