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Protein Overview: RBA50

General Information:
Name(s) found: RBA50 / YDR527W [SGD]
Description(s) found:
Found 22 descriptions.
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  • Protein involved in transcription; interacts with RNA polymerase II subunits Rpb2p, Rpb3, and Rpb11p; has similarity to human RPAP1 [SGD]
    • Organism: Saccharomyces cerevisiae
    Length: 439 amino acids

    Gene Ontology:
    Cellular Component: cytoplasm [IDALink to PubMed articleLink to PubMed article]
    Biological Process: transcription from RNA polymerase II promoter [IMPLink to PubMed article]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLLGDIVEK DTSDSVESND NGTLSTNNCG TGFPELYKPK KISSWKERLR EKRAQKKKTS  60
   61 GKDAEKQQTS TDAPLSEAKS IHNENIKVLQ GMSDEQIVQE REDLYNSLDP KLIAKLLKNI 120
  121 NKRAKDENNT PLFAEIEGAS GTWVGGNKQG IYDLPPLDDE DVDVALEIRP MLGKDAKHVQ 180
  181 FEEAGKEKDV EGEGKTNDDV DDIAPLDFQM AQCIDHMKNE ELFKDVHFIK EESQNEINLE 240
  241 KLDINDPNFN DKLHEKYFPD LPKEVDKLKW MQPVQQKTDK NYIIEDVSEC RFDFNGDLVP 300
  301 PTRQIDSTIH SGLHHHSDSP ELAGYTIVEL EHLARSTFPS QRCIAIQTLG RILYKLGQKS 360
  361 YYQLVPEIDA DTYKEDGSIS NVMDKIYSMF WDLIKDGKVI ESLEISSDEK FTRNLSVRNY 420
  421 AIDALWLWKQ GGGDFRTKK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run RBA50 No Comments Hazbun TR, et al. (2003)
    View Run RBA50 No Comments Hazbun TR, et al. (2003)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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      PROTEIN(S) PUBLICATION
    View Data RBA50 and SPC42 Hazbun TR, et al. (2003)
    View Data RBA50 Huh WK, et al. (2003)

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..138] Pcons 2.14 Constant regulatory domain of protein phosphatase 2a, pr65alpha
    2 View Details [139..289] Pcons 2.14 Constant regulatory domain of protein phosphatase 2a, pr65alpha
    3 View Details [290..439] Pcons 2.14 Constant regulatory domain of protein phosphatase 2a, pr65alpha


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle