YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: gi|190904132, gi...

General Information:
Name(s) found: gi|75231028 [NCBI NR]
gi|191165808 [NCBI NR]
gi|190904132 [NCBI NR]
Description(s) found:
SHOW ONLY BEST
  • gi|75231028|ref|ZP_00717463.1| COG0592: DNA polymerase sliding clamp subunit (PCNA homolog) [Escherichia coli B7A] [NCBI NR]
  • gi|191165808|ref|ZP_03027646.1| DNA polymerase III, beta subunit [Escherichia coli B7A] [NCBI NR]
  • gi|190904132|gb|EDV63843.1| DNA polymerase III, beta subunit [Escherichia coli B7A] [NCBI NR]
  • COG0592: DNA polymerase sliding clamp subunit (PCNA homolog) [Escherichia coli B7A] [nr-271106-contam.fasta]
    • Organism: Escherichia coli B7A
    Length: 366 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFTVEREHL LKPLQQVSGP LGGRPTLPIL GNLLLQVADG TLSLTGTDLE MEMVARVALV  60
   61 QPHEPGATTV PARKFFDICR GLPEGAEIAV QLEGERMLVR SGRSRFSLST LPAADFPNLD 120
  121 DWQSEVEFTL PQATMKRLIE ATQFSMAHQD VRYYLNGMLF ETEGEELRTV ATDGHRLAVC 180
  181 SMPIGQSLPS HSVIVPRKGV IELMRMLDGG DNPLRVQIGS NNIRAHVGDF IFTSKLVDGR 240
  241 FPDYRRVLPK NPDKHLEAGC DLLKQAFARA AILSNEKFRG VRLYVSENQL KITANNPEQE 300
  301 EAEEILDVTY SGAEMEIGFN VSYVLDVLNA LKCENVRMML TDSVSSVQIE DAASQSAAYV 360
  361 VMPMRL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..366] PSI-BLAST 125.0 E. COLI DNA POLYMERASE BETA SUBUNIT

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • DNA-directed DNA polymerase activity
    		•  10.1355867012964 bayes_pls_golite062009
  • DNA polymerase activity
    		•  10.0862166288891 bayes_pls_golite062009
  • nucleotidyltransferase activity
    		•  7.50006430161592 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  3.53479307306028 bayes_pls_golite062009
  • transferase activity
    		•  2.88122926655527 bayes_pls_golite062009
  • binding
    		•  0.65029295764999 bayes_pls_golite062009
  • DNA polymerase processivity factor activity
    		•  0.616404933041 bayes_pls_golite062009
  • catalytic activity
    		•  0.48077242755678 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.4343174930339 bayes_pls_golite062009
  • DNA binding
    		•  0.129085697705275 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle