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Protein Overview: VSR_ECOLI

General Information:
Name(s) found: VSR_ECOLI [Swiss-Prot]
Description(s) found:
Found 11 descriptions.
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  • Very short patch repair protein (EC 3.1.-.-) (DNA mismatch endonuclease) (Vsr mismatch endonuclease) (V.EcoKDcm) - Escherichia coli [Swiss-Prot]
    • Organism: Escherichia coli
    Length: 156 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADVHDKATR SKNMRAIATR DTAIEKRLAS LLTGQGLAFR VQDASLPGRP DFVVDEYRCV  60
   61 IFTHGCFWHH HHCYLFKVPA TRTEFWLEKI GKNVERDRRD ISRLQELGWR VLIVWECALR 120
  121 GREKLTDEAL TERLEEWICG EGASAQIDTQ GIHLLA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..156] PSI-BLAST 61.69897 Very short patch repair (VSR) endonuclease

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • deoxyribonuclease activity
    		•  2.38833494621917 bayes_pls_golite062009
  • endodeoxyribonuclease activity
    		•  2.33372429725567 bayes_pls_golite062009
  • single-stranded DNA specific endodeoxyribonuclease activity
    		•  2.14055367547547 bayes_pls_golite062009
  • single-stranded DNA binding
    		•  1.24151591082448 bayes_pls_golite062009
  • catalytic activity
    		•  1.18688703641003 bayes_pls_golite062009
  • structure-specific DNA binding
    		•  1.14196734165465 bayes_pls_golite062009
  • nuclease activity
    		•  0.90252859343276 bayes_pls_golite062009
  • endonuclease activity
    		•  0.87027578644028 bayes_pls_golite062009
  • hydrolase activity, acting on ester bonds
    		•  0.70849567386272 bayes_pls_golite062009
  • hydrolase activity
    		•  0.7029472543514 bayes_pls_golite062009
  • damaged DNA binding
    		•  0.56396532051994 bayes_pls_golite062009
  • binding
    		•  0.240779272133325 bayes_pls_golite062009
  • DNA binding
    		•  0.0778795682272901 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.051221107975965 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle