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Protein Overview: SECB_AGRFC

General Information:
Name(s) found: SECB_AGRFC [Swiss-Prot]
Description(s) found:
Found 12 descriptions.
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  • Protein-export protein SecB OS=Agrobacterium fabrum (strain C58 / ATCC 33970) GN=secB PE=3 SV=1 [Swiss-Prot]
    • Organism: Agrobacterium tumefaciens str. C58
    Length: 160 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: protein folding [ISS]
    protein secretion [ISS]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTAENGAQGA VSPSLNILAQ YIKDLSFENP GAPRSLQGRE NAPAININVN VNANPISGSD  60
   61 FDVVLTLNAE AKDGDKILFA AELVYGGVFR IAGFPQEHML PVLFIECPRL LFPFARQIIA 120
  121 DVTRNGGFPP LMIDPIDFSQ MFAQRVAEEQ AKAQVQAVPN

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..160] PSI-BLAST 63.30103 Crystal Structure of SecB from Escherichia coli

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • unfolded protein binding
    		•  4.94018795702992 bayes_pls_golite062009
  • binding
    		•  2.83315924084513 bayes_pls_golite062009
  • protein binding
    		•  1.68053363123835 bayes_pls_golite062009
  • protein transporter activity
    		•  0.776419608117039 bayes_pls_golite062009
  • transporter activity
    		•  0.416356073078097 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.96

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle