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Protein Overview: RL6B_YEAST

General Information:
Name(s) found: RL6B_YEAST [Swiss-Prot]
Description(s) found:
  • 60S ribosomal protein L6-B OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPL6B PE=1 SV=4 [Swiss-Prot]
    • Organism: Saccharomyces cerevisiae S288c
    Length: 176 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTAQQAPKWY PSEDVAAPKK TRKAVRPQKL RASLVPGTVL ILLAGRFRGK RVVYLKHLED  60
   61 NTLLVTGPFK VNGVPLRRVN ARYVIATSTK VSVEGVNVEK FNVEYFAKEK LTKKEKKEAN 120
  121 LFPEQQTKEI KTERVEDQKV VDKALLAEIK KTPLLKQYLS ASFSLKNGDK PHLLKF

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..176] Pfam 69.552842 Ribosomal protein L6e No confident structure predictions are available.
    2 View Details [81..176] Pfam 36.657577 No description for PF01159.10 was found. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • structural constituent of ribosome
    		•  9.75663213016935 bayes_pls_golite062009
  • structural molecule activity
    		•  9.17485893013108 bayes_pls_golite062009
  • RNA binding
    		•  1.4457902513736 bayes_pls_golite062009
  • binding
    		•  1.44371103155512 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.35678179370806 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.26877481073647 bayes_pls_golite062009
  • DNA binding
    		•  0.809544484035708 bayes_pls_golite062009
  • translation regulator activity
    		•  0.20179424040045 bayes_pls_golite062009
  • translation factor activity, nucleic acid binding
    		•  0.177099375659271 bayes_pls_golite062009
  • transcription factor activity
    		•  0.145799514762697 bayes_pls_golite062009
  • protein binding
    		•  0.096241933308752 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.83

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle