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Protein Overview: gi|18399975, gi|...

General Information:
Name(s) found: gi|22655036 [NCBI NR]
gi|18399975 [NCBI NR]
gi|15081811 [NCBI NR]
Description(s) found:
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  • gi|22655036|gb|AAM98109.1| At3g13340/MDC11_13 [Arabidopsis thaliana] [NCBI NR]
  • gi|18399975|ref|NP_566453.1| WD-40 repeat family protein [Arabidopsis thaliana] [NCBI NR]
  • gi|15081811|gb|AAK82560.1| AT3g13340/MDC11_13 [Arabidopsis thaliana] [NCBI NR]
  • At3g13340/MDC11_13 [Arabidopsis thaliana]gi|15081811|gb|AAK82560.1| AT3g13340/MDC11_13 [Arabidopsis thaliana]gi|18399975|ref|NP_566453.1| WD-40 repeat family protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 WD-40 repeat family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | WD-40 repeat family protein | chr3:4332377-4334610 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • At3g13340/MDC11_13 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • AT3g13340/MDC11_13 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr3:4332370-4334603 FORWARD LENGTH=447 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • AT3g13340/MDC11_13 OS=Arabidopsis thaliana GN=At3g13340 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 447 amino acids

    Gene Ontology:
    Cellular Component: heterotrimeric G-protein complex [ISS]
    CUL4 RING ubiquitin ligase complex [ISS]
    Biological Process: biological_process [ND]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNYRGDDAE YMEDVDDEME DVEDDMDEEF RGDDLGASDS DVEEFDYSNN KVADTTAEQA  60
   61 RKGKDIQGIP WDRLNISREK YRQTRLEQYK NYENVPNSGE SSEKVCKVTQ KGGLFYDFWR 120
  121 NSRSIKSTIL HFQLRNLVWA TSKHDVYLMS NFLVTHYSSL TSGKHEVLNV RGHVAPSEKH 180
  181 PGSLLEGFTQ TQVSTLAVKD DFLVAGGFQG ELICKHLDRP GVSFCSRMTY DDNAITNAIE 240
  241 IYNKPSGALH FTASNNDCGV RDFDMERYQL VKHFRFPWPV NHASLSPDGK LLAIVGDNPE 300
  301 GLIVDPNTGK TLETLSGHLD FSFASAWHPD GVTFSTGNQD KTCRVWDIRN LSQSVTVLKG 360
  361 NLGAIRSIRY TSDGKYMAMA EPADFVHVYD VSNGYETEQE IDFFGEISGI SFSPDTEALF 420
  421 IGVWDRTYGS LLEFGRRRNY SYLDSYL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..131] PSI-BLAST 17.045757 Crystal Structure analysis of the beta-propeller protein Ski8p
    2 View Details [132..447] PSI-BLAST 71.522879 PAF-AH Holoenzyme: Lis1/Alfa2

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  0.407313201902664 bayes_pls_golite062009
  • protein binding
    		•  0.0109071915022965 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle