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Protein Overview: FAMA_ARATH

General Information:
Name(s) found: FAMA_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|75283553|sp|Q56YJ8.1|FAMA_ARATH RecName: Full=Transcription factor FAMA; AltName: Full=Transcription factor EN 14; AltName: Full=bHLH transcription factor bHLH097; AltName: Full=Basic helix-loop-helix protein 97; Short=bHLH 97; Short=AtbHLH97 [NCBI NR]
  • gi|62319997|dbj|BAD94119.1| putative bHLH transcription factor [Arabidopsis thaliana] [NCBI NR]
  • gi|30687365|ref|NP_189056.2| FMA (FAMA); DNA binding / transcription activator/ transcription factor [Arabidopsis thaliana] [NCBI NR]
  • gi|114213507|gb|ABI54336.1| At3g24140 [Arabidopsis thaliana] [NCBI NR]
  • Transcription factor FAMA OS=Arabidopsis thaliana GN=FAMA PE=1 SV=1 [Swiss-Prot]
  • basic helix-loop-helix (bHLH) family protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Basic helix-loop-helix (bHLH) family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: FMA | FMA (FAMA); DNA binding / transcription activator/ transcription factor | chr3:8715532-8717779 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • DNA binding / transcription factor [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • putative bHLH transcription factor [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • At3g24140 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: FMA | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr3:8715525-8717772 REVERSE LENGTH=414 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Transcription factor FAMA OS=Arabidopsis thaliana GN=FMA PE=1 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 414 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDA]
    Biological Process: guard cell differentiation [IMP]
    negative regulation of cell division [IMP]
    positive regulation of transcription [IDA]
    positive regulation of cell differentiation [IMP]
    Molecular Function: DNA binding [ISS]
    transcription factor activity [ISS]
    transcription activator activity [IDA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDKDYSAPNF LGESSGGNDD NSSGMIDYMF NRNLQQQQKQ SMPQQQQHQL SPSGFGATPF  60
   61 DKMNFSDVMQ FADFGSKLAL NQTRNQDDQE TGIDPVYFLK FPVLNDKIED HNQTQHLMPS 120
  121 HQTSQEGGEC GGNIGNVFLE EKEDQDDDND NNSVQLRFIG GEEEDRENKN VTKKEVKSKR 180
  181 KRARTSKTSE EVESQRMTHI AVERNRRKQM NEHLRVLRSL MPGSYVQRGD QASIIGGAIE 240
  241 FVRELEQLLQ CLESQKRRRI LGETGRDMTT TTTSSSSPIT TVANQAQPLI ITGNVTELEG 300
  301 GGGLREETAE NKSCLADVEV KLLGFDAMIK ILSRRRPGQL IKTIAALEDL HLSILHTNIT 360
  361 TMEQTVLYSF NVKITSETRF TAEDIASSIQ QIFSFIHANT NISGSSNLGN IVFT

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..176] MSA 4.679997 View MSA. No confident structure predictions are available.
    2 View Details [177..310] PSI-BLAST 20.69897 Myc prot-oncogene protein
    3 View Details [311..414] FFAS03 1.62 ACT domain protein from Streptococcus pneumoniae

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  1.12507195426228 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.43204604575196 bayes_pls_golite062009
  • DNA binding
    		•  0.40884226851256 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.31759335140578 bayes_pls_golite062009
  • transcription factor activity
    		•  0.09721565916723 bayes_pls_golite062009
    3
    Term Confidence Notes
  • catalytic activity
    		•  0.0923752113053079 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle