YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YFGA_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.95
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNTEATHDQN EALTTGARLR NAREQLGLSQ QAVAERLCLK VSTVRDIEED KAPADLASTF  60
   61 LRGYIRSYAR LVHIPEEELL PGLEKQAPLR AAKVAPMQSF SLGKRRKKRD GWLMTFTWLV 120
  121 LFVVIGLSGA WWWQDRKAQQ EEITTMADQS SAELSSNSEQ GQSVPLNTST TTDPATTSTP 180
  181 PASVDTTATN TQTPAVTAPA PAVDPQQNAV VSPSQANVDT AATPAPTAAT TPDGAAPLPT 240
  241 DQAGVTTPVA DPNALVMNFT ADCWLEVTDA TGKKLFSGMQ RKDGNLNLTG QAPYKLKIGA 300
  301 PAAVQIQYQG KPVDLSRFIR TNQVARLTLN AEQSPAQ

Type	Start	End	Confidence
Cytoplasmic	1	111	0.99
Transmembrane Helix	112	133	0.95
Non-Cytoplasmic	134	337	0.99