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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|45552108, gi|...
Protein type: Transmembrane
Type Confidence: 0.91
Topology Confidence: 0.79
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLISGSRLFS SSAPPLRLSR SYVSRVDENA PHGTALTFVD PYVPRVYDDD TGKNGVFSLT  60
   61 LLNNNGTFEI SPNVAERSAG FLIRVRDNSM LDYEQQQSVQ FQILAQELGP ATNLSALVNV 120
  121 TVYINDVNDN APVFEQPAYS VELPENMTAG TKVVQVLATD PDSGLGGKVR YTAILGYLNT 180
  181 SLNLDAETGL ITVSTNKHGF DREVMPEYHL YVEARDMDGE GNRAQVPLII KLIDVNDETP 240
  241 IFDKDLYEFI LTHDLMGFTT TAVIHAEDKD ATAPNNEVRY EIINGNYDNQ FVLDKVTGEL 300
  301 TVREKIHLRS KKNAKTRRRR QAGSDDEDTD IFILTARAYD LGVPVRFSTT TIRVYPPESR 360
  361 KRSVKFVVPG HNPDKAKTEE TLSALSGGKV YIHNIRPLSP DEPGAKDIPA GNPGIKERSV 420
  421 VTATVIYDSS SVVDISEIQQ RLSHHNNSYA IMPQDTSSTD TLTPLQTQYK AENKVLFWLL 480
  481 ILLATLVALT ILILLLCCIC SWCPLYGAAT KRIVNISRTE DDVHLVHREM ANGKQTKSVQ 540
  541 VAEWMGRRDA WSAEKPPDTR TKPTRWEFHD GREQLDEDVG RGQDIGEGDR RHIQSAEEQQ 600
  601 RRVRIKHNRT AKDDLHLNFH NSRTNLINDR DVYMEDVIEN RDLAGDREHI TRTRVNRQEY 660
  661 ARRKQYDSEV RHIDDDSMRR HEIDRGSDID FNTAHNSLKS KRELFIKDGN VEILQLMTRD 720
  721 KTRDGLNLDD DNIYVNVPLK PAGNLSHPQL LMVDNTGKEI LMRRFIEEQP DGKQIIREHY 780
  781 QIVPGATYIQ SMPNEVQQGS TLKGDTFPLG KSGPNSIVYS QLEPEVKVIH TQPVQAGEGV 840
  841 SLDQQMQPAV SNQSLTHELE HSLKQQNALL RQILMEKEKL ENAYTQHEVA LETQSLPGQS 900
  901 MAIGTQTDCD AGTQTEGFDG VLDPEISLAK PSRRRARSEN DESMSEDGYE YVRFNPPNSP 960
  961 EGVYWIKRRR TKKRPRQPRK RIVMVEEVKR KIRTPIKEEE EVQERKKRVP PKKPLRETKT1020
 1021 SILRKQLSDE SRKDQSRNGE SQTGNRHRSE SDSHNRDMFM EITDSMDELA SPGSHSIRKI1080
 1081 QVEKYYKHSD GDFDEDDTEY SIDSDGDEIV IRTNYPSRAQ ENERYRRQER TYAEPENPVD1140
 1141 RKRPARKSSP TDSQPEAMPR LSRRDSSKRG SRKQTSSEPP HNRVSISKYE STVTENGRKL1200
 1201 MSTSTEIVGS KRSLTDRSYQ SETELAGLEH EERNVPKYME WYYNKKKSSV SGRTSTESSK1260
 1261 SQPSSKKKVG AAEKRVSKTR ITAQPKDVEE YDETGGRYKP EPAPRKSPPK GSRLLKEDRA1320
 1321 LNKQHKPKIE TDTNHPLLQH SEHRFERENA LEVPAAPTKL PHYMYPETPP HAAAGGKESK1380
 1381 SGRESKTSKE AKPKPSPIRE NEVKVSNSKI YVEHRGTGHP TQKQLNASTL EDDHDSGIAM1440
 1441 NSLLNSLGRR NPIAEKKSVF SIAYDDVSRV KKINSGGESP QYS

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle