YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	THIP_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	11	0.91
Transmembrane Helix	12	35	0.92
Non-Cytoplasmic	36	59	0.90
Transmembrane Helix	60	81	0.92
Cytoplasmic	82	90	0.90
Transmembrane Helix	91	114	0.90
Non-Cytoplasmic	115	135	0.85
Transmembrane Helix	136	154	0.85
Cytoplasmic	155	198	0.91
Transmembrane Helix	199	220	0.90
Non-Cytoplasmic	221	240	0.93
Transmembrane Helix	241	261	0.92
Cytoplasmic	262	288	0.93
Transmembrane Helix	289	311	0.87
Non-Cytoplasmic	312	331	0.93
Transmembrane Helix	332	354	0.91
Cytoplasmic	355	372	0.88
Transmembrane Helix	373	394	0.90
Non-Cytoplasmic	395	402	0.79
Transmembrane Helix	403	424	0.86
Cytoplasmic	425	464	0.93
Transmembrane Helix	465	484	0.95
Non-Cytoplasmic	485	506	0.90
Transmembrane Helix	507	525	0.96
Cytoplasmic	526	536	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATRRQPLIP GWLIPGVSAT TLVVAVALAA FLALWWNAPQ DDWVAVWQDS YLWHVVRFSF  60
   61 WQAFLSALLS VIPAIFLARA LYRRRFPGRL ALLRLCAMTL ILPVLVAVFG ILSVYGRQGW 120
  121 LATLCQSLGL EWTFSPYGLQ GILLAHVFFN LPMASRLLLQ ALENIPGEQR QLAAQLGMRS 180
  181 WHFFRFVEWP WLRRQIPPVA ALIFMLCFAS FATVLSLGGG PQATTIELAI YQALSYDYDP 240
  241 ARAAMLALLQ MVCCLGLVLL SQRLSKAIAP GTTLLQGWRD PDDRLHSRIC DTVLIVLALL 300
  301 LLLPPLLAVI VDGVNRQLPE VLAQPVLWQA LWTSLRIALA AGVLCVVLTM MLLWSSRELR 360
  361 ARQKMLAGQV LEMSGMLILA MPGIVLATGF FLLLNNTIGL PQSADGIVIF TNALMAIPYA 420
  421 LKVLENPMRD ITARYSMLCQ SLGIEGWSRL KVVELRALKR PLAQALAFAC VLSIGDFGVV 480
  481 ALFGNDDFRT LPFYLYQQIG SYRSQDGAVT ALILLLLCFL LFTVIEKLPG RNVKTD