YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PTDA_ECOLI, PTIB...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	103	0.94
Transmembrane Helix	104	127	0.84
Non-Cytoplasmic	128	146	0.81
Transmembrane Helix	147	167	0.90
Cytoplasmic	168	176	0.71
Transmembrane Helix	177	197	0.86
Non-Cytoplasmic	198	213	0.83
Transmembrane Helix	214	233	0.89
Cytoplasmic	234	252	0.88
Transmembrane Helix	253	275	0.92
Non-Cytoplasmic	276	286	0.73
Transmembrane Helix	287	309	0.86
Cytoplasmic	310	329	0.88
Transmembrane Helix	330	350	0.76
Non-Cytoplasmic	351	360	0.69
Transmembrane Helix	361	382	0.80
Cytoplasmic	383	389	0.86
Transmembrane Helix	390	412	0.91
Non-Cytoplasmic	413	432	0.87
Transmembrane Helix	433	455	0.93
Cytoplasmic	456	485	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKNYAALAR SVIAALGGVD NISAVTHCMT RLRFVIKDDA LIDSPTLKTI PGVLGVVRSD  60
   61 NQCQVIIGNT VSQAFQEVVS LLPGDMQPAQ PVGKPKLTLR RIGAGILDAL IGTMSPLIPA 120
  121 IIGGSMVKLL AMILEMSGVL TKGSPTLTIL NVIGDGAFFF LPLMVAASAA IKFKTNMSLA 180
  181 IAIAGVLVHP SFIELMAKAA QGEHVEFALI PVTAVKYTYT VIPALVMTWC LSYIERWVDS 240
  241 ITPAVTKNFL KPMLIVLIAA PLAILLIGPI GIWIGSAISA LVYTIHGYLG WLSVAIMGAL 300
  301 WPLLVMTGMH RVFTPTIIQT IAETGKEGMV MPSEIGANLS LGGSSLAVAW KTKNPELRQT 360
  361 ALAAAASAIM AGISEPALYG VAIRLKRPLI ASLISGFICG AVAGMAGLAS HSMAAPGLFT 420
  421 SVQFFDPANP MSIVWVFAVM ALAVVLSFIL TLLLGFEDIP VEEAAAQARK YQSVQPTVAK 480
  481 EVSLN