YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	KUP_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	8	0.83
Transmembrane Helix	9	30	0.79
Non-Cytoplasmic	31	47	0.88
Transmembrane Helix	48	71	0.88
Cytoplasmic	72	98	0.89
Transmembrane Helix	99	120	0.85
Non-Cytoplasmic	121	138	0.78
Transmembrane Helix	139	157	0.93
Cytoplasmic	158	167	0.80
Transmembrane Helix	168	190	0.89
Non-Cytoplasmic	191	210	0.89
Transmembrane Helix	211	233	0.88
Cytoplasmic	234	242	0.88
Transmembrane Helix	243	266	0.84
Non-Cytoplasmic	267	284	0.95
Transmembrane Helix	285	309	0.90
Cytoplasmic	310	334	0.89
Transmembrane Helix	335	357	0.90
Non-Cytoplasmic	358	362	0.92
Transmembrane Helix	363	385	0.92
Cytoplasmic	386	394	0.79
Transmembrane Helix	395	414	0.94
Non-Cytoplasmic	415	421	0.80
Transmembrane Helix	422	440	0.97
Cytoplasmic	441	622	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTDNKQSLP AITLAAIGVV YGDIGTSPLY TLRECLSGQF GFGVERDAVF GFLSLIFWLL  60
   61 IFVVSIKYLT FVMRADNAGE GGILTLMSLA GRNTSARTTS MLVIMGLIGG SFFYGEVVIT 120
  121 PAISVMSAIE GLEIVAPQLD TWIVPLSIIV LTLLFMIQKH GTAMVGKLFA PIMLTWFLIL 180
  181 AGLGLRSIIA NPEVLHALNP MWAVHFFLEY KTVSFIALGA VVLSITGVEA LYADMGHFGK 240
  241 FPIRLAWFTV VLPSLTLNYF GQGALLLKNP EAIKNPFFLL APDWALIPLL IIAALATVIA 300
  301 SQAVISGVFS LTRQAVRLGY LSPMRIIHTS EMESGQIYIP FVNWMLYVAV VIVIVSFEHS 360
  361 SNLAAAYGIA VTGTMVLTSI LSTTVARQNW HWNKYFVALI LIAFLCVDIP LFTANLDKLL 420
  421 SGGWLPLSLG TVMFIVMTTW KSERFRLLRR MHEHGNSLEA MIASLEKSPP VRVPGTAVYM 480
  481 SRAINVIPFA LMHNLKHNKV LHERVILLTL RTEDAPYVHN VRRVQIEQLS PTFWRVVASY 540
  541 GWRETPNVEE VFHRCGLEGL SCRMMETSFF MSHESLILGK RPWYLRLRGK LYLLLQRNAL 600
  601 RAPDQFEIPP NRVIELGTQV EI