YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CLCA_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	32	0.97
Transmembrane Helix	33	53	0.96
Non-Cytoplasmic	54	74	0.95
Transmembrane Helix	75	97	0.93
Cytoplasmic	98	126	0.97
Transmembrane Helix	127	146	0.91
Non-Cytoplasmic	147	177	0.92
Transmembrane Helix	178	201	0.90
Cytoplasmic	202	211	0.88
Transmembrane Helix	212	232	0.94
Non-Cytoplasmic	233	251	0.94
Transmembrane Helix	252	274	0.91
Cytoplasmic	275	290	0.89
Transmembrane Helix	291	311	0.94
Non-Cytoplasmic	312	318	0.80
Transmembrane Helix	319	342	0.83
Cytoplasmic	343	353	0.64
Transmembrane Helix	354	376	0.85
Non-Cytoplasmic	377	385	0.78
Transmembrane Helix	386	407	0.86
Cytoplasmic	408	420	0.70
Transmembrane Helix	421	440	0.89
Non-Cytoplasmic	441	473	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTDTPSLET PQAARLRRRQ LIRQLLERDK TPLAILFMAA VVGTLVGLAA VAFDKGVAWL  60
   61 QNQRMGALVH TADNYPLLLT VAFLCSAVLA MFGYFLVRKY APEAGGSGIP EIEGALEDQR 120
  121 PVRWWRVLPV KFFGGLGTLG GGMVLGREGP TVQIGGNIGR MVLDIFRLKG DEARHTLLAT 180
  181 GAAAGLAAAF NAPLAGILFI IEEMRPQFRY TLISIKAVFI GVIMSTIMYR IFNHEVALID 240
  241 VGKLSDAPLN TLWLYLILGI IFGIFGPIFN KWVLGMQDLL HRVHGGNITK WVLMGGAIGG 300
  301 LCGLLGFVAP ATSGGGFNLI PIATAGNFSM GMLVFIFVAR VITTLLCFSS GAPGGIFAPM 360
  361 LALGTVLGTA FGMVAVELFP QYHLEAGTFA IAGMGALLAA SIRAPLTGII LVLEMTDNYQ 420
  421 LILPMIITGL GATLLAQFTG GKPLYSAILA RTLAKQEAEQ LARSKAASAS ENT