YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ACRF_ECOLI
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.69
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	26	0.69
N-region	1	17
H-region	18	23
C-region	24	26
Cleavage Site	26	27
Non-Cytoplasmic	27	339	0.99
Transmembrane Helix	340	359	0.93
Cytoplasmic	360	365	0.87
Transmembrane Helix	366	387	0.91
Non-Cytoplasmic	388	392	0.76
Transmembrane Helix	393	416	0.84
Cytoplasmic	417	437	0.92
Transmembrane Helix	438	459	0.91
Non-Cytoplasmic	460	471	0.72
Transmembrane Helix	472	494	0.87
Cytoplasmic	495	539	0.93
Transmembrane Helix	540	558	0.94
Non-Cytoplasmic	559	871	0.98
Transmembrane Helix	872	891	0.95
Cytoplasmic	892	897	0.83
Transmembrane Helix	898	918	0.94
Non-Cytoplasmic	919	923	0.91
Transmembrane Helix	924	945	0.89
Cytoplasmic	946	973	0.91
Transmembrane Helix	974	994	0.91
Non-Cytoplasmic	995	1003	0.79
Transmembrane Helix	1004	1028	0.89
Cytoplasmic	1029	1034	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANFFIRRPI FAWVLAIILM MAGALAILQL PVAQYPTIAP PAVSVSANYP GADAQTVQDT  60
   61 VTQVIEQNMN GIDNLMYMSS TSDSAGSVTI TLTFQSGTDP DIAQVQVQNK LQLATPLLPQ 120
  121 EVQQQGISVE KSSSSYLMVA GFVSDNPGTT QDDISDYVAS NVKDTLSRLN GVGDVQLFGA 180
  181 QYAMRIWLDA DLLNKYKLTP VDVINQLKVQ NDQIAAGQLG GTPALPGQQL NASIIAQTRF 240
  241 KNPEEFGKVT LRVNSDGSVV RLKDVARVEL GGENYNVIAR INGKPAAGLG IKLATGANAL 300
  301 DTAKAIKAKL AELQPFFPQG MKVLYPYDTT PFVQLSIHEV VKTLFEAIML VFLVMYLFLQ 360
  361 NMRATLIPTI AVPVVLLGTF AILAAFGYSI NTLTMFGMVL AIGLLVDDAI VVVENVERVM 420
  421 MEDKLPPKEA TEKSMSQIQG ALVGIAMVLS AVFIPMAFFG GSTGAIYRQF SITIVSAMAL 480
  481 SVLVALILTP ALCATLLKPV SAEHHENKGG FFGWFNTTFD HSVNHYTNSV GKILGSTGRY 540
  541 LLIYALIVAG MVVLFLRLPS SFLPEEDQGV FLTMIQLPAG ATQERTQKVL DQVTDYYLKN 600
  601 EKANVESVFT VNGFSFSGQA QNAGMAFVSL KPWEERNGDE NSAEAVIHRA KMELGKIRDG 660
  661 FVIPFNMPAI VELGTATGFD FELIDQAGLG HDALTQARNQ LLGMAAQHPA SLVSVRPNGL 720
  721 EDTAQFKLEV DQEKAQALGV SLSDINQTIS TALGGTYVND FIDRGRVKKL YVQADAKFRM 780
  781 LPEDVDKLYV RSANGEMVPF SAFTTSHWVY GSPRLERYNG LPSMEIQGEA APGTSSGDAM 840
  841 ALMENLASKL PAGIGYDWTG MSYQERLSGN QAPALVAISF VVVFLCLAAL YESWSIPVSV 900
  901 MLVVPLGIVG VLLAATLFNQ KNDVYFMVGL LTTIGLSAKN AILIVEFAKD LMEKEGKGVV 960
  961 EATLMAVRMR LRPILMTSLA FILGVLPLAI SNGAGSGAQN AVGIGVMGGM VSATLLAIFF1020
 1021 VPVFFVVIRR CFKG