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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|24647463, gi|...
Protein type: Transmembrane
Type Confidence: 0.98
Topology Confidence: 0.45
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSEAYPMKS SVKISQKKKA SQDMAVICVW VMPLAVFGLI AIGQAAKTGQ VQGNSGSCAF  60
   61 HTLDGVAAES EGVRFIRLRE DAQVGKEILR LQAYPRSTAA LKGADASGDH KYFNLTEHNA 120
  121 TTLVVSLARS LERLVDRDVP RNLLKFRILC AGKQEKLEEG SYLSITVYIE DVNDNAPEFL 180
  181 NVPYVVDVDE NTSIESIIFE GVQAFDRDKP NTPNSEVHFS MSTVPEQLSA DGSPYFALKS 240
  241 PHRPLLILKR ELDFDNGIRQ FKLPIFAWDR GTPANQANTT ITINVRDVDD LPPKFTEGVY 300
  301 RTRINEFYPM TGVPIRIPLY FAPPIMAFDQ DSLNASLVYD IISGNERQLF RVNPHNGVMY 360
  361 LQKEIDLEEE SLPGNTFVLQ LEARQKDNPL KKALARIEVE VLDLNDNVPE FEADYYNISI 420
  421 VENLPTGFSV LQVNAVDRDQ GENSEFLYNL VETKDAAGAF RIDSRTGWIT VRDDRLLDRE 480
  481 QRRSIQLNVE ALERNPSYLD DKHLKKPGPS KVQVEITLLD TNDNTPKFEH GNLYEFKVPI 540
  541 NAPTGYVIGQ VVAHDPDEGP NGHLLYELQR PKGSGYIPFR LDNKNGTIYV GGPLRRGRIA 600
  601 VFVEATDQPT NPSERRFSLA VITIEVYATI DDQAIDFVGA PYEFWVGANT PLGTSVGQVR 660
  661 TTLIYEGGDE IMYDLLHTYS EGVPFAIEER SGIITVIREL SEFKRKVYQF EAVANYLFAN 720
  721 SSQSLVMSRS SSPLTTIASP AELSDEGVLI TNLTIHIVNK PEQKVPLRPV IEEINMNVIH 780
  781 FHVEENVVGG IIGQLLYKNG INLVNNELGT YREMPSEPTS RNITMGSRFR SRNRSRSSKS 840
  841 KRRLPRRLVG DANIKLRYII ANQQEVVNKI SITEDGTLLT LTGLDREQQP SYELTVIVEY 900
  901 STGLVSGAGI YQVNIKVDDV NDNAPKFNAL TYVGLINENC VVGTELSMNH AILIQDADEG 960
  961 PNAEFRVQLQ GDYSDEFSIE YVNGTSSENS THHKMPSTTG AFNIFNLTDQ WNDEFKYQEL1020
 1021 HTTFMQTNFK LSSGPYFRIS YTGKRGLDRE KQQLYNLKII AADTGGLSGY AHLTVLVADV1080
 1081 NDNAPMFERI SVFKDSRLEI REYTTDMEIY FVESSSGMTA PQATAAMMLA PPPYHIPGSP1140
 1141 RFNVDRERSV GAGLGVVARA KSRRRMVRAL TTKCPLFAIY EDTPVGTKVL QLSASDEDFG1200
 1201 KNALLHYELQ GEQVERTPGM PMLRVHGVKY FAIDKLSGEL SVNYPLSANI EIMLNLTVTD1260
 1261 IDGLKDSTCL RFTVMDVNNH APTFKKSWYS FDTPEGEYKD SVLGQLTAID MDFGENANIT1320
 1321 YTLSDSHLPF TIKPASGVLK IGGQLDRELK DKYSFQVIAT DNAPVMQRMS SSVDVEVNVL1380
 1381 DINDNRPEFI GYDDQTKAVK FIPSVADRTL MLPVYKAYLD RSTQPGTFVR QLTAIDKDNV1440
 1441 GNGNGLVLYS IRHQEMQAPL FQIDSRDGTI STISRINGYN DYEHLNVSVI ASDVGSPALS1500
 1501 ATAIVIVNLQ GQAVTDPPKS TPKPEPPANV TVFQHAYYEV KLTENNEAPI EVMRLNLSAG1560
 1561 LNPENYRWSL WLEEGLDETD AHPPFEYDAK NMLLYALKPF DREHISRYQL RIRADRLSRE1620
 1621 ARNYARVSYP VVDERIEGLS LNECRILVHI ADENDNAPKF RGNGQPIVAV LPQSASFGYP1680
 1681 VTRVEANDLD EGLNAEIRYR LLNEPARLFG IDELSGNIRL LGELSRTEHI YGFDVKATDR1740
 1741 MGADDGRSGI VNVFVYIINE AKQVRLVVAG MPVEVERRIE GLMEALSDAI GKDVRVRLLE1800
 1801 PYSGGLEPAT NAYIYAVDPH TNSIMEMEQL QDALAGLQLD ALQLQQQKLD GGKPMPRILE1860
 1861 LAEFGQLARP AHASASSFMG GLEFVTVVLL ALISLGALIA ACCYVCMRQK RRLWSQRDFS1920
 1921 ASDAGLTYTI AGIGSPRGQK QRRQRQQRHT QRCSKGSTGS QRPTSAFMPE SVCSSAQTQS1980
 1981 TATATEKLEQ QLHHHHQQQA MATQQQHHQY LNEQQRQQKR EYIDVPLPKS IAKAAAVTSG2040
 2041 GDGAVGVGST PFVLKYNACQ PVNNLNNYET SLFSLHSTGQ DSGVEFLSSR ELYETSPDSF2100
 2101 QHGGSKRGNN TEVLCPRHAK AHLELRQPNT DSSDTYEDSL KTDEPLVAHN CRSANCEHRQ2160
 2161 HQQHPSHHPH YQNTRFEKRS CVRHSFSGVK DDLMQQSPQI SLRPRGHALR NSMNDLEQRL2220
 2221 HNLEQSFRRP LEFSKSNSLF 

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