YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Ote-PA
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADVDDFDSL SNAELRAKML AQGLPNIPVT DSSRKVLVKR LRASIGGQAS PAASPKKTNR  60
   61 RETLAPAPGA PSAPAAASTP VDKLDGNKVA PATKARRTIT AAEAKEPVRR LPEEAIRRRP 120
  121 DEADRLRSEE PVAARKPTTA PAAQPVQTRR TSTSSGSERK VVEPLRKPET IVEQPASSKR 180
  181 ADREENYLKV NSLIVLESDE EEDEQLVQAA DLVEQEHAAR QKTTKLASSG TTTYEYKSKV 240
  241 VEPPRRQVYE ATAAPVLPPS VPSARAQTTS STRSYDYASN PAPGRYSSFV RTAAQGYVTA 300
  301 EAPPVASYSS SYKRTYANEL SDDTDSKEDQ YESTFARNLA RLRAERIGDR ISPYSRRTLA 360
  361 SGNAGSGSLG YEPRARRSLR PNDNSVSEAF NRWLNSLEQK YHIKSKLFIV LLVLLLIGVY 420
  421 YIFY

Type	Start	End	Confidence
Cytoplasmic	1	401	0.63
Transmembrane Helix	402	423	0.86
Non-Cytoplasmic	424	424	0.69