YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ARE2
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	216	0.79
Transmembrane Helix	217	236	0.89
Cytoplasmic	237	254	0.69
Transmembrane Helix	255	276	0.84
Non-Cytoplasmic	277	289	0.71
Transmembrane Helix	290	311	0.91
Cytoplasmic	312	319	0.74
Transmembrane Helix	320	340	0.86
Non-Cytoplasmic	341	407	0.78
Transmembrane Helix	408	422	0.54
Cytoplasmic	423	433	0.54
Transmembrane Helix	434	458	0.79
Non-Cytoplasmic	459	478	0.56
Transmembrane Helix	479	504	0.77
Cytoplasmic	505	566	0.61
Transmembrane Helix	567	587	0.80
Non-Cytoplasmic	588	591	0.62
Transmembrane Helix	592	610	0.74
Cytoplasmic	611	620	0.63
Transmembrane Helix	621	641	0.93
Non-Cytoplasmic	642	642	0.85

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDKKKDLLEN EQFLRIQKLN AADAGKRQSI TVDDEGELYG LDTSGNSPAN EHTATTITQN  60
   61 HSVVASNGDV AFIPGTATEG NTEIVTEEVI ETDDNMFKTH VKTLSSKEKA RYRQGSSNFI 120
  121 SYFDDMSFEH RPSILDGSVN EPFKTKFVGP TLEKEIRRRE KELMAMRKNL HHRKSSPDAV 180
  181 DSVGKNDGAA PTTVPTAATS ETVVTVETTI ISSNFSGLYV AFWMAIAFGA VKALIDYYYQ 240
  241 HNGSFKDSEI LKFMTTNLFT VASVDLLMYL STYFVVGIQY LCKWGVLKWG TTGWIFTSIY 300
  301 EFLFVIFYMY LTENILKLHW LSKIFLFLHS LVLLMKMHSF AFYNGYLWGI KEELQFSKSA 360
  361 LAKYKDSIND PKVIGALEKS CEFCSFELSS QSLSDQTQKF PNNISAKSFF WFTMFPTLIY 420
  421 QIEYPRTKEI RWSYVLEKIC AIFGTIFLMM IDAQILMYPV AMRALAVRNS EWTGILDRLL 480
  481 KWVGLLVDIV PGFIVMYILD FYLIWDAILN CVAELTRFGD RYFYGDWWNC VSWADFSRIW 540
  541 NIPVHKFLLR HVYHSSMSSF KLNKSQATLM TFFLSSVVHE LAMYVIFKKL RFYLFFFQML 600
  601 QMPLVALTNT KFMRNRTIIG NVIFWLGICM GPSVMCTLYL TF