YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FMP42
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	8	0.94
Transmembrane Helix	9	32	0.88
Non-Cytoplasmic	33	62	0.93
Transmembrane Helix	63	82	0.88
Cytoplasmic	83	91	0.71
Transmembrane Helix	92	111	0.94
Non-Cytoplasmic	112	120	0.75
Transmembrane Helix	121	143	0.90
Cytoplasmic	144	151	0.83
Transmembrane Helix	152	174	0.90
Non-Cytoplasmic	175	186	0.85
Transmembrane Helix	187	206	0.93
Cytoplasmic	207	302	0.95
Transmembrane Helix	303	323	0.94
Non-Cytoplasmic	324	343	0.88
Transmembrane Helix	344	365	0.88
Cytoplasmic	366	370	0.80
Transmembrane Helix	371	390	0.84
Non-Cytoplasmic	391	393	0.58
Transmembrane Helix	394	415	0.67
Cytoplasmic	416	421	0.64
Transmembrane Helix	422	444	0.85
Non-Cytoplasmic	445	461	0.65
Transmembrane Helix	462	483	0.91
Cytoplasmic	484	504	0.67

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSTRTLRYA QVACACIWCL FSAGIIFGFA ALKPILISEG VYHELCDPKD GDRLLCTAQD  60
   61 LKLNFIFALS ATVTNIMALP VGKILDMYGP RVCGIIGSCL LFLASGNFIS AKHLVSLWDP 120
  121 YLVGYTLLAV AGPFVFISCF QLANSFPQRS GTVLALLTGS FDSSSALFLL YRLLYQNWFP 180
  181 TLNVSRFFTL YLIVPVFILA CQLTIMPHSS YKTVNHIAKI AVEGLDENGR LIEGDTGSGI 240
  241 IPDEQERQSL IAIEREEDSI PSRPQRRKSV LETYVEDKLQ KKSGGIFGVL HGKSAYEQIK 300
  301 SPWFYLMLLF ALVAMLRINY FIATVRTQEE YLLNDPDLAL KLNSIFDMLL PLGGAVSIPF 360
  361 IGLLLDHTDT LSTLTILFTT STAIGVFGLI PNSFTWNLIG IVLLVVYRPF YYTVVSDYSS 420
  421 KVFGFDTFGT VYGLLSCICG IFNMSQNLLD KWTHTTFNMN PFPINLTLVI LTVVFSLTLT 480
  481 FYIRSQILPK PVNERGLSSN YQTI