YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	DCW1
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.92
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLVNKVIGLL GVLFATRFTN AVELDLDNYE SLQNATSLIA YGLMDYYTGN QYGKTVGMFS  60
   61 DPYYWWEAGG AWGCMLDYWF FMDNDTYNDE IIAAMIHQAG DDNDYIPLNQ STTEGNDDQA 120
  121 FWGIAAMTAA ERNFTNPPEN EPQWLYLAQA VFNTMALRWD ADSCGGGLRW QIFVWNSGYD 180
  181 YKNTVSNGAL FHIAARLARY TGNQTYVDWA EKVYEWMVGV NLISNGTYKY VYDGVSIDDN 240
  241 CTKVTSYQWT YNQGLLLAGS AYLYNFTGSD LWHTRTKEFL NASQVFFHDG IVYEAACQGP 300
  301 NSCNTDQRSF KAYFARFLGV TAQLVPETRN QIMSWLNTSA IAAAKSCSGG TDGHTCGLNW 360
  361 FNGTWDGMYG LGEQMSALEV MVNTRALDKP APYTAENGGS SVGDGAAGTQ AQPTNLAPLN 420
  421 ITKGSKAGAG IITAVIGISI VACALWLVF

Type	Start	End	Confidence
Signal Peptide	1	21	0.97
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	426	0.97
Transmembrane Helix	427	448	0.90
Cytoplasmic	449	449	0.88