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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: Dscam-PAD
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.95
Topology Confidence: 0.89
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNMPNERLKW LMLFAAVALI ACGSQTLAAN PPDADQKGPV FLKEPTNRID FSNSTGAEIE  60
   61 CKASGNPMPE IIWIRSDGTA VGDVPGLRQI SSDGKLVFPP FRAEDYRQEV HAQVYACLAR 120
  121 NQFGSIISRD VHVRAVVNQF YGADILMEYV IRGNAAVLKC SIPSFVADFV RVESWIDEEG 180
  181 TELRPSENYD GKYLVLPSGE LHIREVGPED GYKSYQCRTK HRLTGETRLS ATKGRLVITE 240
  241 PVGSVAPKIS VENRLKNAEA RIGSTFTLFC PGQAYPVPFF RWYKFIEGTT RKQAVVLNDR 300
  301 VKQVSGTLII KDAVVEDSGK YLCVVNNSVG GESVETVLTV TAPLSAKIDP PTQTVDFGRP 360
  361 AVFTCQYTGN PIKTVSWMKD GKAIGHSEPV LRIESVKKED KGMYQCFVRN DQESAEASAE 420
  421 LKLGGRFDPP VIRQAFQEET MEPGPSVFLK CVAGGNPTPE ISWELDGKKI ANNDRYQVGQ 480
  481 YVTVNGDVVS YLNITSVHAN DGGLYKCIAK SKVGVAEHSA KLNVYGLPYI RQMEKKAIVA 540
  541 GETLIVTCPV AGYPIDSIVW ERDNRALPIN RKQKVFPNGT LIIENVERNS DQATYTCVAK 600
  601 NQEGYSARGS LEVQVMVAPK IAPFDFGDEP SNFGESASVQ CLVTSGDFPV SFAWLFNGRE 660
  661 INENVYDVSM VKLGKKISAL SIDIVRDHHA GNYTCVAVNR ATSVNFTAEL VVNVPPRWIL 720
  721 EPTDKAFAQG SDAKVECKAD GFPKPQVTWK KAVGDTPGEY KDLKKSDNIR VEEGTLHVDN 780
  781 IQKTNEGYYL CEAINGIGSG LSAVIMISVQ APPEFTEKLR NQTARRGEPA VLQCEAKGEK 840
  841 PIGILWNMNN MRLDPKNDNR YTIREEILST GVMSSLSIKR TERSDSALFT CVATNAFGSD 900
  901 DASINMIVQE VPEMPYALKV LDKSGRSVQL SWAQPYDGNS PLDRYIIEFK RSRASWSEID 960
  961 RVIVPGHTTE AQVQKLSPAT TYNIRIVAEN AIGTSQSSEA VTIITAEEAP SGKPQNIKVE1020
 1021 PVNQTTMRVT WKPPPRTEWN GEILGYYVGY KLSNTNSSYV FETINFITEE GKEHNLELQN1080
 1081 LRVYTQYSVV IQAFNKIGAG PLSEEEKQFT AEGTPSQPPS DTACTTLTSQ TIRVGWVSPP1140
 1141 LESANGVIKT YKVVYAPSDE WYDETKRHYK KTASSDTVLH GLKKYTNYTM QVLATTAGGD1200
 1201 GVRSVPIHCQ TEPDVPEAPT DVKALVMGNA AILVSWRPPA QPNGIITQYT VYSKAEGAET1260
 1261 ETKTQKVPHY QMSFEATELE KNKPYEFWVT ASTTIGEGQQ SKSIVAMPSD QVPAKIASFD1320
 1321 DTFTATFKED AKMPCLAVGA PQPEITWKIK GVEFSANDRM RVLPDGSLLI KSVNRQDAGD1380
 1381 YSCHAENSIA KDSITHKLIV LAPPQSPHVT LSATTTDALT VKLKPHEGDT APLHGYTLHY1440
 1441 KPEFGEWETS EVSVDSQKHN IEGLLCGSRY QVYATGFNNI GAGEASDILN TRTKGQKPKL1500
 1501 PEKPRFIEVS SNSVSLHFKA WKDGGCPMSH FVVESKKRDQ IEWNQISNNV KPDNNYVVLD1560
 1561 LEPATWYNLR ITAHNSAGFT VAEYDFATLT VTGGTIAPSR DLPELSAEDT IRIILSNLNL1620
 1621 VVPVVAALLV IIIAIIVICI LRSKGNHHKD DVVYNQTMGP GATLDKRRPD LRDELGYIAP1680
 1681 PNRKLPPVPG SNYNTCDRIK RGRGGLRSNH STWDPRRNPN LYEELKAPPV PMHGNHYGHA1740
 1741 HGNAECHYRH PGMEDEICPY ATFHLLGFRE EMDPTKAMNF QTFPHQNGHA GPVPGHAGTM1800
 1801 LPPGHPGHVH SRSGSQSMPR ANRYQRKNSQ GGQSSIYTPA PEYDDPANCA EEDQYRRYTR1860
 1861 VNSQGGSLYS GPGPEYDDPA NCAPEEDQYG SQYGGPYGQP YDHYGSRGSM GRRSIGSARN1920
 1921 PGNGSPEPPP PPPRNHDMSN SSFNDSKESN EISEAECDRD HGPRGNYGAV KRSPQPKDQR1980
 1981 TTEEMRKLIE RNETGPKQLQ LQQANGAGFT AYDTMAV

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