YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ARN2
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	64	0.99
Transmembrane Helix	65	85	0.92
Non-Cytoplasmic	86	102	0.88
Transmembrane Helix	103	125	0.90
Cytoplasmic	126	134	0.72
Transmembrane Helix	135	153	0.95
Non-Cytoplasmic	154	161	0.77
Transmembrane Helix	162	183	0.91
Cytoplasmic	184	192	0.84
Transmembrane Helix	193	212	0.92
Non-Cytoplasmic	213	226	0.81
Transmembrane Helix	227	248	0.91
Cytoplasmic	249	285	0.94
Transmembrane Helix	286	306	0.94
Non-Cytoplasmic	307	317	0.76
Transmembrane Helix	318	335	0.96
Cytoplasmic	336	354	0.88
Transmembrane Helix	355	376	0.91
Non-Cytoplasmic	377	393	0.84
Transmembrane Helix	394	413	0.96
Cytoplasmic	414	420	0.86
Transmembrane Helix	421	440	0.94
Non-Cytoplasmic	441	448	0.83
Transmembrane Helix	449	469	0.93
Cytoplasmic	470	488	0.86
Transmembrane Helix	489	508	0.94
Non-Cytoplasmic	509	524	0.81
Transmembrane Helix	525	543	0.72
Cytoplasmic	544	558	0.66
Transmembrane Helix	559	578	0.74
Non-Cytoplasmic	579	637	0.66

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIEVPEDNRS SQTKRKNTEK NCNELMVDEK MDDDSSPRDE MKDKLKGTKS LIIRKSELMA  60
   61 KKYDTWQLKA IFLFSAFICT FAYGLDSSIR GTYMTYAMNS YSAHSLISTV SVIVLMISAV 120
  121 SQVIFGGLSD IFGRLTLFLV SIVLYIVGTI IQSQAYDVQR YAAGAVFYYV GLVGVMLQVV 180
  181 LMLSDNSSLK WRLFYTLIPS WPSIITTWVS GSVVEAANPL ENWSWNIAMW AFIFPLCCIP 240
  241 LILCMLHMRW KVRNDVEWKE LQDEKSYYQT HGLVQMLVQL FWKLDVVGVL LFTAGVGCIL 300
  301 VPLTLAGGVS TNWRNSKIIG PFVLGFVLVP GFIYWESRLA LVPFAPFKLL KDRGVWAPLG 360
  361 IMFFICFVYQ MAAGYLYTIL VVAVDESASS ATRIINLYSF VTAVVAPFLG LIVTRSSRLK 420
  421 SYIIFGGSLY FITMGLFYRY RSGQDADGGI IAGMVIWGLS SCLFDYPTIV SIQSVTSHEN 480
  481 MATVTALNYT VFRIGGAVAA AISGAIWTQS LYPKLLHYMG DADLATAAYG SPLTFILSNP 540
  541 WGTPVRSAMV EAYRHVQKYE VIVALVFSAP MFLLTFCVRD PRLTEDFAQK LPDREYVQTK 600
  601 EDDPINDWIA KRFAKALGGH KKDLQNPNRI CVRKNDL