YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YHL008C
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVDDSNYLTP HETALAVVAT AMKKARLQLD TLLINSILGG VLFSSGSFLL VAVYSEDPDI  60
   61 VARNPGIVNL ITGVNFAMGL FYVVMMGADL FNSNILFFSV GVLRKAVTIY DLMISWVVSW 120
  121 LGNIAGSLFV SYLFGHLSGI SSQKLWIIGS RQIIEQKVSY SFVQTFLKGI ACNFFVCLAI 180
  181 YLQLMAKPIH VKFILMSFPI IDFIGIGFTH VVGDMSASFI AMLNGANVSV GKYIWKLLIP 240
  241 ASLGNIVGGL FFSAVVPFYL HLVVVERDRK RLSLPEYEAR DEQPELNMDS RVVRIQKNEC 300
  301 DDDATETGED LENLTEKGFA SIYNTNHDNS SYFTGRSLNS LRSIPSSVIT SDNVTMESDL 360
  361 GEPVQFIPKS NSTTRSPHLG LPHNLPHNHS IKSINRHRIN KRHSLRSPPG VFPVRGMGEP 420
  421 LEREKTIEDA TYDPKENELF LRRAETHNSA YVKNKKKEDD NLLRLVKTEE DREQKEYEKN 480
  481 GGYNILENKP GTRLEKIITH LAENVSSREV TPPILPRTTQ DTFPHNAPAS SPAYTDDAHS 540
  541 LRKANSTTLG GLFRAVSKEF HSSKDAESPD DLLKKMAAVG INRNARITAN NVAGIVNLNK 600
  601 EDLDSTTRRQ KITEPKNFYN RHTSPQL

Type	Start	End	Confidence
Cytoplasmic	1	31	0.95
Transmembrane Helix	32	53	0.95
Non-Cytoplasmic	54	75	0.78
Transmembrane Helix	76	98	0.78
Cytoplasmic	99	111	0.70
Transmembrane Helix	112	136	0.82
Non-Cytoplasmic	137	164	0.80
Transmembrane Helix	165	184	0.91
Cytoplasmic	185	192	0.68
Transmembrane Helix	193	213	0.83
Non-Cytoplasmic	214	240	0.52
Transmembrane Helix	241	263	0.90
Cytoplasmic	264	627	0.61