YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	COX15
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLFRNIEVGR QAAKLLTRTS SRLAWQSIGA SRNISTIRQQ IRKTQLYNFK KTVSIRPFSL  60
   61 SSPVFKPHVA SESNPIESRL KTSKNVAYWL IGTSGLVFGI VVLGGLTRLT ESGLSITEWK 120
  121 PVTGTLPPMN QKEWEEEFIK YKESPEFKLL NSHIDLDEFK FIFFMEWIHR LWGRAIGAVF 180
  181 ILPAVYFAVS KKTSGHVNKR LFGLAGLLGL QGFVGWWMVK SGLDQEQLDA RKSKPTVSQY 240
  241 RLTTHLGTAF FLYMGMLWTG LEILRECKWI KNPVQAISLF KKLDNPAIGP MRKISLALLA 300
  301 VSFLTAMSGG MVAGLDAGWV YNTWPKMGER WFPSSRELMD ENFCRREDKK DLWWRNLLEN 360
  361 PVTVQLVHRT CAYVAFTSVL AAHMYAIKKK AVIPRNAMTS LHVMMGVVTL QATLGILTIL 420
  421 YLVPISLASI HQAGALALLT SSLVFASQLR KPRAPMRNVI ITLPHSSKVT SGKILSEASK 480
  481 LASKPL

Type	Start	End	Confidence
Cytoplasmic	1	85	0.99
Transmembrane Helix	86	107	0.94
Non-Cytoplasmic	108	170	0.97
Transmembrane Helix	171	190	0.95
Cytoplasmic	191	200	0.85
Transmembrane Helix	201	219	0.95
Non-Cytoplasmic	220	241	0.95
Transmembrane Helix	242	261	0.91
Cytoplasmic	262	295	0.93
Transmembrane Helix	296	317	0.91
Non-Cytoplasmic	318	365	0.95
Transmembrane Helix	366	387	0.92
Cytoplasmic	388	400	0.88
Transmembrane Helix	401	422	0.92
Non-Cytoplasmic	423	427	0.81
Transmembrane Helix	428	449	0.89
Cytoplasmic	450	486	0.98