YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SHO1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSISSKIRPT PRKPSRMATD HSFKMKKFYA DPFAISSISL AIVSWVIAIG GSISSASTNE  60
   61 SFPRFTWWGI VYQFLIICSL MLFYCFDLVD HYRIFITTSI AVAFVYNTNS ATNLVYADGP 120
  121 KKAAASAGVI LLSIINLIWI LYYGGDNASP TNRWIDSFSI KGIRPSPLEN SLHRARRRGN 180
  181 RNTTPYQNNV YNDAIRDSGY ATQFDGYPQQ QPSHTNYVSS TALAGFENTQ PNTSEAVNLH 240
  241 LNTLQQRINS ASNAKETNDN SNNQTNTNIG NTFDTDFSNG NTETTMGDTL GLYSDIGDDN 300
  301 FIYKAKALYP YDADDDDAYE ISFEQNEILQ VSDIEGRWWK ARRANGETGI IPSNYVQLID 360
  361 GPEEMHR

Type	Start	End	Confidence
Cytoplasmic	1	32	0.83
Transmembrane Helix	33	53	0.91
Non-Cytoplasmic	54	64	0.77
Transmembrane Helix	65	86	0.90
Cytoplasmic	87	93	0.72
Transmembrane Helix	94	116	0.76
Non-Cytoplasmic	117	122	0.71
Transmembrane Helix	123	144	0.92
Cytoplasmic	145	367	0.78