YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FUI1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	131	0.99
Transmembrane Helix	132	150	0.94
Non-Cytoplasmic	151	158	0.78
Transmembrane Helix	159	180	0.89
Cytoplasmic	181	192	0.75
Transmembrane Helix	193	215	0.76
Non-Cytoplasmic	216	220	0.53
Transmembrane Helix	221	239	0.60
Cytoplasmic	240	254	0.54
Transmembrane Helix	255	276	0.91
Non-Cytoplasmic	277	283	0.57
Transmembrane Helix	284	305	0.92
Cytoplasmic	306	367	0.68
Transmembrane Helix	368	392	0.88
Non-Cytoplasmic	393	416	0.84
Transmembrane Helix	417	437	0.80
Cytoplasmic	438	457	0.77
Transmembrane Helix	458	476	0.92
Non-Cytoplasmic	477	484	0.80
Transmembrane Helix	485	507	0.92
Cytoplasmic	508	536	0.93
Transmembrane Helix	537	560	0.86
Non-Cytoplasmic	561	571	0.71
Transmembrane Helix	572	592	0.92
Cytoplasmic	593	639	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPVSDSGFDN SSKTMKDDTI PTEDYEEITK ESEMGDATKI TSKIDANVIE KKDTDSENNI  60
   61 TIAQDDEKVS WLQRVVEFFE VKNDSTDLAD HKPENPIRTF KDLQESLRST YLYNTDLRPV 120
  121 EAKRRTWTWK QYIFFWISGS FNVNTWQISA TGLQLGLNWW QTWICIWVGY TFVAFFLILG 180
  181 SKVGNNYHIS FPISSRVSFG IYFSIWIVIN RVVMACVWNS TLAYIGSQCV QLMLKAIFGT 240
  241 NLNTRIKDTI KNPNLTNFEF MCFMVFWVAC LPFLWFPPDK LRHIFALKSA ITPFAAFGFL 300
  301 IWTLCKAKGH LALGSLNDNG GAISKTVLAW SVIRAIMSAL DNFSTLILNA PDFTRFGKTY 360
  361 KSSVYSQLIA LPVCYAIISL IGILSVSAAY TLYGVNYWSP LDILNRYLDN YTSGNRAGVF 420
  421 LISFIFAFDQ LGANLSGNSI PAGTDLTALL PKFINIRRGS YICALISLAI CPWDLLSSSS 480
  481 KFTTALAAYA VFLSAIAGVI SADYFIVRKG YVNIFHCYTD KPGSYYMYNK YGTNWRAVVA 540
  541 YIFGIAPNFA GFLGSVGVSV PIGAMKVYYL NYFVGYLLAA LSYCILVYFY PIKGIPGDAK 600
  601 ITDRKWLEEW VEVEEFGTER EAFEEYGGVS TGYEKIRYI