YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	abts-2
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	260	0.64
Transmembrane Helix	261	282	0.88
Non-Cytoplasmic	283	290	0.53
Transmembrane Helix	291	310	0.74
Cytoplasmic	311	314	0.46
Transmembrane Helix	315	335	0.67
Non-Cytoplasmic	336	345	0.82
Transmembrane Helix	346	368	0.87
Cytoplasmic	369	378	0.90
Transmembrane Helix	379	401	0.92
Non-Cytoplasmic	402	421	0.91
Transmembrane Helix	422	441	0.95
Cytoplasmic	442	453	0.89
Transmembrane Helix	454	476	0.89
Non-Cytoplasmic	477	503	0.95
Transmembrane Helix	504	526	0.88
Cytoplasmic	527	544	0.89
Transmembrane Helix	545	566	0.90
Non-Cytoplasmic	567	617	0.90
Transmembrane Helix	618	642	0.80
Cytoplasmic	643	675	0.91
Transmembrane Helix	676	697	0.88
Non-Cytoplasmic	698	703	0.71
Transmembrane Helix	704	721	0.93
Cytoplasmic	722	737	0.86

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPELLCRTER VEHARNFKTE VRGLMDVDHL IERACIHRNM NHSHIHTILL SLFSDLSSRF  60
   61 PQEKFDLALF KNAVFSVSDR DSRAPRLHHK LQSYSGTDFF DVNQTWIVTY AQLDGLKQSH 120
  121 MALATLEDAT NLGLEMEEAR TVVLILSPSY EKHTKSAAEI ARTFATLLMN DTLRQSVNDA 180
  181 ADDDQLRDLL TEYAKGLSQQ LTIQVNGKPI ADDDDEYESK NSSFCPYYPF RGLVKDFKRR 240
  241 MANYKSDYLD GIKDRRSVSK VISTAVFLIF TILPTSIAYG MLNENNTNGA INVQKVVLGQ 300
  301 WIGSLLFGIF GGQQLLILST TAPLSIYIAV IYQVAQTNDW DFFQMYASVG IYAMGLLILA 360
  361 SVFQLASLMK FTTRSTEEIF SVFIALALII KAIMAIVHVY THGYLGCINN VAGDLCDPAE 420
  421 PLLFIFLLFG TTWLSMTIIS FRSSPYLSRW KRDLVSDYAL PIAVLVFSFI SFFGFSDVKK 480
  481 EQFQIFSRET DAFFVPFFNL PAEAQLPAVG LAIPLSILFF MDQLLVTNTV DNKDNKLKKG 540
  541 SAHHWDLLVV GVLNIGLSIF GLPWMHGALP SAYLHLKALS DVEDRLHNGY IQTVIVHVRE 600
  601 TRLATLIAHI IMIPIYFFLV PHITVFIPTS IFNGVFLFMA FSSLTGNEFW ERILLIFTEQ 660
  661 RAYPPTHYIR RVPQRVVHQF TIIEFIQLVI LVAIGFAQYH YVEMVFPIVI AAFIPFRHFF 720
  721 LPLFIRKQYL EAIDGQH