YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	OCT7_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	23	0.85
Transmembrane Helix	24	44	0.81
Non-Cytoplasmic	45	62	0.83
Transmembrane Helix	63	82	0.96
Cytoplasmic	83	91	0.85
Transmembrane Helix	92	110	0.95
Non-Cytoplasmic	111	115	0.85
Transmembrane Helix	116	138	0.94
Cytoplasmic	139	147	0.88
Transmembrane Helix	148	170	0.91
Non-Cytoplasmic	171	176	0.79
Transmembrane Helix	177	197	0.92
Cytoplasmic	198	293	0.98
Transmembrane Helix	294	313	0.92
Non-Cytoplasmic	314	342	0.91
Transmembrane Helix	343	361	0.88
Cytoplasmic	362	367	0.78
Transmembrane Helix	368	387	0.88
Non-Cytoplasmic	388	394	0.64
Transmembrane Helix	395	415	0.92
Cytoplasmic	416	426	0.78
Transmembrane Helix	427	450	0.84
Non-Cytoplasmic	451	456	0.68
Transmembrane Helix	457	478	0.91
Cytoplasmic	479	500	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADGNTRFTV DEALVAMGFG KFQIYVLAYA GMGWVAEAME MMLLSFVGPA VQSLWNLSAR  60
   61 QESLITSVVF AGMLIGAYSW GIVSDKHGRR KGFIITAVVT FVAGFLSAFS PNYMWLIILR 120
  121 CLVGLGLGGG PVLASWYLEF IPAPSRGTWM VVFSAFWTVG TIFEASLAWL VMPRLGWRWL 180
  181 LAFSSVPSSL LLLFYRWTSE SPRYLILQGR KAEALAILEK IARMNKTQLP PGVLSSELET 240
  241 ELEENKNIPT ENTHLLKAGE SGEAVAVSKI VLKADKEPGF SLLALLSPTL MKRTLLLWVV 300
  301 FFGNAFAYYG VVLLTTELNN SHNRCYPTEK QLRNSNDVNY RDVFIASFAE FPGLLISAAM 360
  361 VDRLGRKASM ASMLFTCCIF LLPLLSHQSP FITTVLLFGG RICISAAFTV VYIYAPEIYP 420
  421 TAVRTTGVGV GSSVGRIGGI LCPLVAVGLV HGCHQTIAVL LFEVVILVSG ICVCLFPFET 480
  481 SGRDLTDSIS ASKEPPSASV