YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	EDL16_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	41	0.96
Transmembrane Helix	42	66	0.83
Non-Cytoplasmic	67	79	0.92
Transmembrane Helix	80	102	0.87
Cytoplasmic	103	112	0.85
Transmembrane Helix	113	135	0.87
Non-Cytoplasmic	136	141	0.81
Transmembrane Helix	142	160	0.95
Cytoplasmic	161	170	0.81
Transmembrane Helix	171	192	0.90
Non-Cytoplasmic	193	197	0.74
Transmembrane Helix	198	217	0.93
Cytoplasmic	218	275	0.97
Transmembrane Helix	276	300	0.82
Non-Cytoplasmic	301	315	0.83
Transmembrane Helix	316	336	0.94
Cytoplasmic	337	343	0.92
Transmembrane Helix	344	365	0.94
Non-Cytoplasmic	366	377	0.80
Transmembrane Helix	378	401	0.85
Cytoplasmic	402	409	0.80
Transmembrane Helix	410	431	0.87
Non-Cytoplasmic	432	443	0.78
Transmembrane Helix	444	463	0.92
Cytoplasmic	464	482	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAIREIKDVE RGEIVNKVED LGKPFLTHED DEKESENNES YLMVLFSTFV AVCGSFEFGS  60
   61 CVGYSAPTQS SIRQDLNLSL AEFSMFGSIL TIGAMLGAVM SGKISDFSGR KGAMRTSACF 120
  121 CITGWLAVFF TKGALLLDVG RFFTGYGIGV FSYVVPVYIA EISPKNLRGG LTTLNQLMIV 180
  181 IGSSVSFLIG SLISWKTLAL TGLAPCIVLL FGLCFIPESP RWLAKAGHEK EFRVALQKLR 240
  241 GKDADITNEA DGIQVSIQAL EILPKARIQD LVSKKYGRSV IIGVSLMVFQ QFVGINGIGF 300
  301 YASETFVKAG FTSGKLGTIA IACVQVPITV LGTILIDKSG RRPLIMISAG GIFLGCILTG 360
  361 TSFLLKGQSL LLEWVPSLAV GGVLIYVAAF SIGMGPVPWV IMSEIFPINV KGIAGSLVVL 420
  421 VNWSGAWAVS YTFNFLMSWS SPGTFYLYSA FAAATIIFVA KMVPETKGKT LEEIQACIRR 480
  481 ET