Protein: | toy-PA |
Organism: | Drosophila melanogaster |
Length: | 543 amino acids |
Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for toy-PA.
Description | E-value | Query Range |
Subject Range |
|
282.0 | [0..1] | [316..4] |
Region A: Residues: [1-162] |
1 11 21 31 41 51 | | | | | | 1 MMLTTEHIMH GHPHSSVGQS TLFGCSTAGH SGINQLGGVY VNGRPLPDST RQKIVELAHS 60 61 GARPCDISRI LQVSNGCVSK ILGRYYETGS IKPRAIGGSK PRVATTPVVQ KIADYKRECP 120 121 SIFAWEIRDR LLSEQVCNSD NIPSVSSINR VLRNLASQKE QQ |
Detection Method: | |
Confidence: | 54.522879 |
Match: | 1k78A |
Description: | Pax-5 |
Matching Structure (courtesy of the PDB): |
Term | Confidence | Notes |
transcription regulator activity | 5.13863038737912 | bayes_pls_golite062009 |
DNA binding | 4.66369707598026 | bayes_pls_golite062009 |
nucleic acid binding | 4.51452285155271 | bayes_pls_golite062009 |
transcription factor activity | 4.06706589695599 | bayes_pls_golite062009 |
sequence-specific DNA binding | 3.5139760613123 | bayes_pls_golite062009 |
RNA polymerase II transcription factor activity | 3.16896789933192 | bayes_pls_golite062009 |
transcription activator activity | 3.10621734076555 | bayes_pls_golite062009 |
binding | 3.02779747447702 | bayes_pls_golite062009 |
transcription repressor activity | 1.91962622287073 | bayes_pls_golite062009 |
protein binding | 1.88087411289001 | bayes_pls_golite062009 |
specific RNA polymerase II transcription factor activity | 1.73068440195944 | bayes_pls_golite062009 |
chromatin binding | 1.68956710349366 | bayes_pls_golite062009 |
transcription factor binding | 1.40653841901929 | bayes_pls_golite062009 |
transcription cofactor activity | 0.84983974758882 | bayes_pls_golite062009 |
transcription corepressor activity | 0.25931464844298 | bayes_pls_golite062009 |
Region A: Residues: [163-271] |
1 11 21 31 41 51 | | | | | | 1 AQQQNESVYE KLRMFNGQTG GWAWYPSNTT TAHLTLPPAA SVVTSPANLS GQADRDDVQK 60 61 RELQFSVEVS HTNSHDSTSD GNSEHNSSGD EDSQMRLRLK RKLQRNRTS |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
Region A: Residues: [272-333] |
1 11 21 31 41 51 | | | | | | 1 FSNEQIDSLE KEFERTHYPD VFARERLADK IGLPEARIQV WFSNRRAKWR REEKMRTQRR 60 61 SA |
Detection Method: | |
Confidence: | 11.154902 |
Match: | 2cueA |
Description: | Solution structure of the homeobox domain of the human paired box protein Pax-6 |
Matching Structure (courtesy of the PDB): |
Term | Confidence | Notes |
transcription regulator activity | 5.13863038737912 | bayes_pls_golite062009 |
DNA binding | 4.66369707598026 | bayes_pls_golite062009 |
nucleic acid binding | 4.51452285155271 | bayes_pls_golite062009 |
transcription factor activity | 4.06706589695599 | bayes_pls_golite062009 |
sequence-specific DNA binding | 3.5139760613123 | bayes_pls_golite062009 |
RNA polymerase II transcription factor activity | 3.16896789933192 | bayes_pls_golite062009 |
transcription activator activity | 3.10621734076555 | bayes_pls_golite062009 |
binding | 3.02779747447702 | bayes_pls_golite062009 |
transcription repressor activity | 1.91962622287073 | bayes_pls_golite062009 |
protein binding | 1.88087411289001 | bayes_pls_golite062009 |
specific RNA polymerase II transcription factor activity | 1.73068440195944 | bayes_pls_golite062009 |
chromatin binding | 1.68956710349366 | bayes_pls_golite062009 |
transcription factor binding | 1.40653841901929 | bayes_pls_golite062009 |
transcription cofactor activity | 0.84983974758882 | bayes_pls_golite062009 |
transcription corepressor activity | 0.25931464844298 | bayes_pls_golite062009 |
Region A: Residues: [334-543] |
1 11 21 31 41 51 | | | | | | 1 DTVDGSGRTS TANNPSGTTA SSSVATSNNS TPGIVNSAIN VAERTSSALV SNSLPEASNG 60 61 PTVLGGEANT THTSSESPPL QPAAPRLPLN SGFNTMYSSI PQPIATMAEN YNSSLGSMTP 120 121 SCLQQRDAYP YMFHDPLSLG SPYVSAHHRN TACNPSAAHQ QPPQHGVYTN SSPMPSSNTG 180 181 VISAGVSVPV QISTQNVSDL TGSNYWPRLQ |
Detection Method: | |
Confidence: | 0.96 |
Match: | 2j63A |
Description: | No description for 2j63A was found. |