| Protein: | EMX1_MOUSE |
| Organism: | Mus musculus |
| Length: | 257 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for EMX1_MOUSE.
| Description | E-value | Query Range |
Subject Range |
|
|
157.0 | [0..1] | [257..1] |
|
|
155.0 | [0..1] | [257..1] |
|
|
155.0 | [0..1] | [257..1] |
|
|
155.0 | [0..1] | [257..34] |
|
|
130.0 | [0..1] | [257..1] |
|
|
129.0 | [0..7] | [228..1] |
|
|
127.0 | [0..1] | [228..1] |
|
|
126.0 | [0..7] | [234..1] |
|
|
126.0 | [0..159] | [248..3] |
|
Region A: Residues: [1-125] |
1 11 21 31 41 51
| | | | | |
1 MFQPAAKRGF TIESLVAKDG GTGGSPGSGG AGSHPLAVAA SEEPLRPTAL NYPHPSAAET 60
61 AFVSGFPAAA AAGAGRSLYG GPELVFPEAM NHPALTVHPA HQLGSSSLQP PHSFFSAQHR 120
121 DPLHF
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [126-257] |
1 11 21 31 41 51
| | | | | |
1 YPWVLRNRFF GHRFQASDVP QDGLLLHGPF ARKPKRIRTA FSPSQLLRLE RAFEKNHYVV 60
61 GAERKQLAGS LSLSETQVKV WFQNRRTKYK RQKLEEEGPE SEQKKKGSHH INRWRIATKQ 120
121 ANGEDIDVTS ND
|
| Detection Method: | |
| Confidence: | 22.30103 |
| Match: | 1b72A |
| Description: | Homeobox protein hox-b1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 4.67711146264366 | bayes_pls_golite062009 |
| DNA binding | 4.26679916438424 | bayes_pls_golite062009 |
| nucleic acid binding | 4.10991419309805 | bayes_pls_golite062009 |
| transcription factor activity | 3.74788993580019 | bayes_pls_golite062009 |
| binding | 3.02779747447702 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 2.16521751467289 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 1.96364983538233 | bayes_pls_golite062009 |
| transcription repressor activity | 1.79427849359671 | bayes_pls_golite062009 |
| transcription activator activity | 1.6126228397074 | bayes_pls_golite062009 |
| transcription factor binding | 1.32991027110041 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 0.9526286147364 | bayes_pls_golite062009 |
| protein binding | 0.830419844171551 | bayes_pls_golite062009 |
| chromatin binding | 0.775421813815509 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.71989890364863 | bayes_pls_golite062009 |
| transcription corepressor activity | 0.0615820877359203 | bayes_pls_golite062009 |
