YRC Public Data Repository - Protein Structure Prediction

Protein:	RS17_MOUSE
Organism:	Mus musculus
Length:	135 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RS17_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|76646952 - gi\|76646952\|ref\|XP_879148.1\| PREDICTED: similar to cytoplasmic polyadenylation element binding prote...	289.0	[0..2]	[135..451]
gi\|114658563, gi... - gi\|114658567\|ref\|XP_001159325.1\| PREDICTED: cytoplasmic polyadenylation element binding protein 1 is...	288.0	[0..2]	[135..451]
gi\|109082205 - gi\|109082205\|ref\|XP_001084315.1\| PREDICTED: similar to cytoplasmic polyadenylation element binding p...	288.0	[0..2]	[135..526]
gi\|94391403 - gi\|94391403\|ref\|XP_998593.1\| PREDICTED: similar to 40S ribosomal protein S17 [Mus musculus]	269.0	[0..3]	[135..127]
RS17_RAT - 40S ribosomal protein S17 OS=Rattus norvegicus GN=Rps17 PE=1 SV=3	256.0	[0..1]	[135..1]
RS17_COTJA - 40S ribosomal protein S17 OS=Coturnix coturnix japonica GN=RPS17 PE=2 SV=3 gi\|29149613 - gi\|29149613\|gb\|AAO46161.1\| ribosomal protein S17 [Coturnix coturnix] RS17_CHICK - 40S ribosomal protein S17 OS=Gallus gallus GN=RPS17 PE=2 SV=3 gi\|197127577, gi... - gi\|197127578\|gb\|ACH44076.1\| putative ribosomal protein S17 variant 1 [Taeniopygia guttata], gi\|19712...	256.0	[0..1]	[135..1]
gi\|60652803 - gi\|60652803\|gb\|AAX29096.1\| ribosomal protein S17 [synthetic construct]	256.0	[0..1]	[135..1]

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Predicted Domain #1

Region A:
Residues: [1-67]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRVRTKTVK KAARVIIEKY YTRLGNDFHT NKRVCEEIAI IPSKKLRNKI AGYVTHLMKR  60
   61 IQRGPVR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	17.0
Match:	1rq6A
Description:	Solution structure of ribosomal protein S17E from Methanobacterium Thermoautotrophicum, Northeast Structural Genomics Consortium Target TT802 / Ontario Center for Structural Proteomics Target Mth0803
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	8.46684512737821	bayes_pls_golite062009
structural molecule activity	7.90461593765642	bayes_pls_golite062009
RNA binding	2.57574983926732	bayes_pls_golite062009
binding	1.30923742450698	bayes_pls_golite062009
nucleic acid binding	0.644832948797119	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [68-135]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GISIKLQEEE RERRDNYVPE VSALDQEIIE VDPDTKEMLK LLDFGSLSNL QVTQPTVGMN  60
   61 FKTPRGAV

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	3.920819
Match:	PF00833.9
Description:	No description for PF00833.9 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: