YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|41406067
Organism:	Homo sapiens
Length:	102 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|41406067.

Description	E-value	Query Range	Subject Range
gi\|114613267 - gi\|114613267\|ref\|XP_510606.2\| PREDICTED: similar to H2A histone family, member V isoform 1 variant [...	1.0E-37	[1..102]	[162..263]
gi\|68432331 - gi\|68432331\|ref\|XP_690287.1\| PREDICTED: similar to ReO_6 [Danio rerio]	3.0E-37	[2..101]	[313..412]
gi\|109500010 - gi\|109500010\|ref\|XP_001065720.1\| PREDICTED: similar to H2A histone family, member V isoform 1 [Rattu...	3.0E-36	[2..102]	[163..263]
gi\|109066680 - gi\|109066680\|ref\|XP_001093992.1\| PREDICTED: similar to H2A histone family, member V isoform 1 [Macac...	3.0E-36	[2..102]	[214..314]
H2A2_PSAMI - Late histone H2A.2.1 OS=Psammechinus miliaris PE=2 SV=2	6.0E-36	[2..101]	[25..124]
gi\|50729216 - gi\|50729216\|ref\|XP_425459.1\| PREDICTED: similar to histone 2, H2ac [Gallus gallus]	1.0E-35	[2..102]	[26..126]
gi\|94391335 - gi\|94391335\|ref\|XP_994513.1\| PREDICTED: similar to H2A histone family, member V isoform 1 [Mus muscu...	1.0E-35	[2..102]	[103..203]

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Predicted Domain #1

Region A:
Residues: [1-102]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFPVGRIHRH LKTRTTSHGR VGATAAVYSA AILEYLTAEV LELAGNASKD LKVKRITPRH  60
   61 LQLAIRGDEE LDSLIKATIA GGGVIPHIHK SLIGKKGQQK TA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	35.0
Match:	1f66C
Description:	Histone H2A
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.581886805340955	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: