YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|41406071, gi\|...
Organism:	Homo sapiens
Length:	90 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|41406071, gi|....

Description	E-value	Query Range	Subject Range
gi\|68432331 - gi\|68432331\|ref\|XP_690287.1\| PREDICTED: similar to ReO_6 [Danio rerio]	3.0E-37	[2..89]	[324..412]
gi\|87042811 - gi\|87042811\|gb\|ABD16410.1\| HTA6-sGFP [Gateway adapted binary vector pCGTAG]	1.0E-35	[2..90]	[46..135]
gi\|87042808 - gi\|87042808\|gb\|ABD16408.1\| HTA6-EYFP [Gateway adapted binary vector pFYTAG]	2.0E-35	[2..90]	[46..135]
gi\|159128079 - gi\|159128079\|gb\|EDP53194.1\| histone H2A [Aspergillus fumigatus A1163] gi\|71000767, gi\|... - gi\|71000767\|ref\|XP_755065.1\| histone H2A [Aspergillus fumigatus Af293], gi\|66852702\|gb\|EAL93027.1\| h...	3.0E-34	[2..79]	[38..116]
gi\|50729216 - gi\|50729216\|ref\|XP_425459.1\| PREDICTED: similar to histone 2, H2ac [Gallus gallus]	6.0E-34	[2..90]	[37..126]
gi\|74004252 - gi\|74004252\|ref\|XP_545426.2\| PREDICTED: similar to Histone H2A.l (H2A/l) [Canis familiaris]	7.0E-34	[2..87]	[86..172]
gi\|76612869 - gi\|76612869\|ref\|XP_871733.1\| PREDICTED: similar to histone H2A [Bos taurus]	2.0E-33	[2..89]	[97..185]
H2A_PODAS - Histone H2A OS=Podospora anserina GN=HTA1 PE=3 SV=3 gi\|189091760 - gi\|189091760\|ref\|XP_001929713.1\| [Podospora anserina]	2.0E-33	[2..89]	[39..127]

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Predicted Domain #1

Region A:
Residues: [1-90]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGGKAGKDS GKAKAKAVSR SQRAGLQVLE LAGNASKDLK VKRITPRHLQ LAIRGDEELD  60
   61 SLIKATIAGG GVIPHIHKSL IGKKGQQKTA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	28.154902
Match:	1f66C
Description:	Histone H2A
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.581886805340955	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: