YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|42657272
Organism:	Homo sapiens
Length:	124 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|42657272.

Description	E-value	Query Range	Subject Range
gi\|109018521 - gi\|109018521\|ref\|XP_001108187.1\| PREDICTED: similar to 40S ribosomal protein S25 [Macaca mulatta]	2.0E-45	[4..124]	[188..308]
gi\|114572319 - gi\|114572319\|ref\|XP_514173.2\| PREDICTED: similar to ribosomal protein S25 [Pan troglodytes]	5.0E-41	[11..124]	[75..188]
gi\|73955048 - gi\|73955048\|ref\|XP_536549.2\| PREDICTED: similar to 40S ribosomal protein S25 [Canis familiaris]	7.0E-40	[1..124]	[75..199]
gi\|119569329, gi... - gi\|88988836\|ref\|XP_942473.1\| PREDICTED: similar to 40S ribosomal protein S25 [Homo sapiens], gi\|1195...	4.0E-38	[1..124]	[1..124]
gi\|47188265 - gi\|47188265\|emb\|CAF87311.1\| unnamed protein product [Tetraodon nigroviridis]	3.0E-37	[1..124]	[14..138]
gi\|109483864, gi... - gi\|109485269\|ref\|XP_001071065.1\| PREDICTED: similar to 40S ribosomal protein S25 [Rattus norvegicus]...	7.0E-36	[11..124]	[31..144]
gi\|60652757 - gi\|60652757\|gb\|AAX29073.1\| ribosomal protein S25 [synthetic construct]	1.0E-35	[1..124]	[1..125]

Back

Predicted Domain #1

Region A:
Residues: [1-124]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPPKDDEKKD AGKSAKKNKD PVNKSGGKAK KKKWSKGKVR DKLNNLVLFD KATYDKLCKE  60
   61 VPNYKLITPA VVSERLKIRG SLARAALQEL LSKGLIKLVS KHRAQVIYTR NTKGGDAPAA 120
  121 GEDA

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	0.994
Match:	1wi9A
Description:	Solution structure of the PCI domain from mouse hypothetical protein AAH51541
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.683379929086364	bayes_pls_golite062009
transcription regulator activity	0.16959343932447	bayes_pls_golite062009
nucleic acid binding	0.0949481158963694	bayes_pls_golite062009
DNA binding	0.00746597740509714	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: