YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|119605123, gi...
Organism:	Homo sapiens
Length:	128 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|119605123, gi....

Description	E-value	Query Range	Subject Range
gi\|114676157 - gi\|114676157\|ref\|XP_001135183.1\| PREDICTED: similar to ubiquitin A-52 residue ribosomal protein fusi...	3.0E-61	[1..128]	[94..221]
gi\|73986078 - gi\|73986078\|ref\|XP_533870.2\| PREDICTED: similar to ubiquitin A-52 residue ribosomal protein fusion p...	4.0E-60	[1..128]	[59..186]
gi\|109124042 - gi\|109124042\|ref\|XP_001115463.1\| PREDICTED: similar to ubiquitin A-52 residue ribosomal protein fusi...	1.0E-58	[1..128]	[49..176]
gi\|114193911, gi... - gi\|115390965\|ref\|XP_001212987.1\| 60S ribosomal protein L40 [Aspergillus terreus NIH2624], gi\|1141939...	5.0E-58	[4..128]	[298..422]
gi\|70990606, gi\|... - gi\|70990606\|ref\|XP_750152.1\| ubiquitin (UbiA), putative [Aspergillus fumigatus Af293], gi\|66847784\|g...	9.0E-58	[1..128]	[97..224]
gi\|13569612 - gi\|13569612\|gb\|AAK31162.1\| ubiquitin A-52 residue ribosomal protein fusion product 1 [Homo sapiens]	1.0E-56	[1..128]	[14..141]
gi\|113431898 - gi\|113431898\|emb\|CAJ90900.1\| ubiquitin/ribosomal fusion protein homologue [Salmo salar]	5.0E-55	[1..125]	[10..134]
gi\|91080141 - gi\|91080141\|ref\|XP_968519.1\| PREDICTED: similar to ribosomal protein Ubq/L40e [Tribolium castaneum]	9.0E-55	[1..128]	[1..128]
gi\|185134441, gi... - gi\|6633991\|dbj\|BAA88568.1\| ubiquitin [Oncorhynchus mykiss], gi\|185134441\|ref\|NP_001117666.1\| ubiquit... gi\|197632607, gi... - gi\|223672341\|gb\|ACN12352.1\| Ubiquitin [Salmo salar], gi\|223646494\|gb\|ACN10005.1\| Ubiquitin [Salmo sa... gi\|113707410 - gi\|113707410\|gb\|ABI36601.1\| ubiquitin/ribosomal protein L40 fusion protein [Bufo gargarizans]	1.0E-54	[1..128]	[1..128]

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Predicted Domain #1

Region A:
Residues: [1-64]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQIFVKTLTG KTITLEVEPS DTIENVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLSDYN  60
   61 IQKE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	38.0
Match:	2ojrA
Description:	No description for 2ojrA was found.

Predicted Domain #2

Region A:
Residues: [65-128]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 STLHLVLRLR GGIIEPSLRQ LAQKYNCDKM ICRKCYARLH PRAVNCRKKK CGHTNNLRPK  60
   61 KKVK

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.9
Match:	2ayjA
Description:	No description for 2ayjA was found.

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	9.67761199764219	bayes_pls_golite062009
structural molecule activity	9.13063837111868	bayes_pls_golite062009
binding	1.81525505623128	bayes_pls_golite062009
protein binding	1.39181618480952	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: