YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|119588321, gi...
Organism:	Homo sapiens
Length:	353 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|119588321, gi....

Description	E-value	Query Range	Subject Range
gi\|113476999, gi... - gi\|113476999\|ref\|YP_723060.1\| peptidase-like [Trichodesmium erythraeum IMS101], gi\|110168047\|gb\|ABG5...	6.0E-44	[3..334]	[371..715]
gi\|72397234, gi\|... - gi\|73670072\|ref\|YP_306087.1\| hypothetical protein Mbar_A2597 [Methanosarcina barkeri str. Fusaro], g...	3.0E-43	[2..273]	[847..1118]
gi\|116751398, gi... - gi\|71545433\|ref\|ZP_00666364.1\| TPR repeat:TPR-related region [Syntrophobacter fumaroxidans MPOB], gi...	2.0E-42	[2..265]	[123..396]
gi\|25534507 - pir\|\|AH2108 hypothetical protein all2423 [imported] - Nostoc sp. (strain PCC 7120) gi\|17229915, gi\|... - gi\|17229915\|ref\|NP_486463.1\| hypothetical protein all2423 [Nostoc sp. PCC 7120], gi\|17131515\|dbj\|BAB...	4.0E-42	[8..312]	[368..672]
gi\|35212793, gi\|... - gi\|37521795\|ref\|NP_925172.1\| hypothetical protein gll2226 [Gloeobacter violaceus PCC 7421], gi\|35212...	6.0E-42	[2..286]	[97..393]
gi\|186686829, gi... - gi\|53687333\|ref\|ZP_00107979.2\| COG0457: FOG: TPR repeat [Nostoc punctiforme PCC 73102], gi\|186686829...	1.0E-41	[7..277]	[287..557]

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Predicted Domain #1

Region A:
Residues: [1-260]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGQDQTKQQI EKGLQLYQSN QTEKALQVWT KVLEKSSDLM GRFRVLGCLV TAHSEMGRYK  60
   61 EMLKFAVVQI DTARELEDAD FLLESYLNLA RSNEKLCEFH KTISYCKTCL GLPGTRAGAQ 120
  121 LGGQVSLSMG NAFLGLSVFQ KALESFEKAL RYAHNNDDAM LECRVCCSLG SFYAQVKDYE 180
  181 KALFFPCKAA ELVNNYGKGW SLKYRAMSQY HMAVAYRLLG RLGSAMECCE ESMKIALQHG 240
  241 DRPLQALCLL CFADIHRSRG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	8.69897
Match:	1hz4A
Description:	Transcription factor MalT domain III
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	2.06634498978728	bayes_pls_golite062009
protein binding	1.60857679122674	bayes_pls_golite062009
signal transducer activity	0.945586902460441	bayes_pls_golite062009
molecular transducer activity	0.945586902460441	bayes_pls_golite062009
receptor activity	0.273696548489824	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [261-353]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DLELSQLKLH CLSESIYRSK GLQRELRAHV VRFHECVEET ELYCGLCGES IGEKNSRLQA  60
   61 LPCSHIFHLR CLQNNGTRSC PNCRRSSMKP GFV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	5.69897
Match:	1x4jA
Description:	Solution structure of RING finger in RING finger protein 38
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: