YRC Public Data Repository - Protein Structure Prediction

Protein:	YPHF_ECOLI
Organism:	Escherichia coli
Length:	327 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YPHF_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|167038831, gi... - gi\|167038831\|ref\|YP_001661816.1\| periplasmic binding protein/LacI transcriptional regulator [Thermoa... gi\|242258204, gi... - gi\|242258204\|ref\|ZP_04803030.1\| transcriptional regulator, LacI family [Thermoanaerobacter sp. X513]...	289.0	[0..3]	[315..34]
gi\|20515183, gi\|... - gi\|20806727\|ref\|NP_621898.1\| transcriptional regulator [Thermoanaerobacter tengcongensis MB4], gi\|20... gi\|20806727 - gi\|20806727\|ref\|NP_621898.1\| Transcriptional regulator [Thermoanaerobacter tengcongensis MB4] gi\|254478068, gi... - gi\|254478068\|ref\|ZP_05091451.1\| Periplasmic binding proteins and sugar binding domain of the LacI fa...	286.0	[0..3]	[315..34]
gi\|76797419, gi\|... - gi\|76797419\|ref\|ZP_00779738.1\| regulatory protein, LacI:Periplasmic binding protein/LacI transcripti... gi\|241882990, gi... - gi\|241904637\|ref\|ZP_04789316.1\| transcriptional regulator, LacI family [Thermoanaerobacter brockii s...	279.0	[0..3]	[315..34]
gi\|37200774, gi\|... - gi\|37676233\|ref\|NP_936629.1\| transcriptional regulator [Vibrio vulnificus YJ016], gi\|37200774\|dbj\|BA...	273.0	[0..2]	[314..24]
RBSR_PASMU - Ribose operon repressor OS=Pasteurella multocida GN=rbsR PE=3 SV=1 RBSR_PASMU - Ribose operon repressor OS=Pasteurella multocida (strain Pm70) GN=rbsR PE=3 SV=1	272.0	[0..4]	[322..33]
gi\|89209818, gi\|... - gi\|89209818\|ref\|ZP_01188212.1\| regulatory protein, LacI:Periplasmic binding protein/LacI transcripti...	271.0	[0..2]	[315..32]

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Predicted Domain #1

Region A:
Residues: [1-327]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPTKMRTTRN LLLMATLLGS ALFARAAEKE MTIGAIYLDT QGYYAGVRQG VQDAAKDSSV  60
   61 QVQLIETNAQ GDISKESTFV DTLVARNVDA IILSAVSENG SSRTVRRASE AGIPVICYNT 120
  121 CINQKGVDKY VSAYLVGDPL EFGKKLGNAA ADYFIANKID QPKIAVINCE AFEVCVQRRK 180
  181 GFEEVLKSRV PGAQIVANQE GTVLDKAISV GEKLIISTPD LNAIMGESGG ATLGAVKAVR 240
  241 NQNQAGKIAV FGSDMTTEIA QELENNQVLK AVVDISGKKM GNAVFAQTLK VINKQADGEK 300
  301 VIQVPIDLYT KTEDGKQWLA THVDGLP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	68.39794
Match:	1zvvA
Description:	Crystal structure of a ccpa-crh-dna complex
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.22720925836419	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: