YRC Public Data Repository - Protein Structure Prediction

Protein:	YJEB_ECOLI, NSRR...
Organism:	Escherichia coli
Length:	141 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YJEB_ECOLI, NSRR....

Description	E-value	Query Range	Subject Range
gi\|224586207, gi... - gi\|224586207\|ref\|YP_002640006.1\| putative negative regulator [Salmonella enterica subsp. enterica se... gi\|205360093, gi... - gi\|205360093\|ref\|ZP_02834507.2\| transcriptional repressor NsrR [Salmonella enterica subsp. enterica ... gi\|205327229, gi... - gi\|205358148\|ref\|ZP_02576074.2\| transcriptional repressor NsrR [Salmonella enterica subsp. enterica ... gi\|198243076, gi... - gi\|198243076\|ref\|YP_002218251.1\| transcriptional repressor NsrR [Salmonella enterica subsp. enterica... gi\|197244125, gi... - gi\|197265870\|ref\|ZP_03165944.1\| transcriptional repressor NsrR [Salmonella enterica subsp. enterica ... gi\|195873714, gi... - gi\|195873714\|ref\|ZP_02698652.2\| transcriptional repressor NsrR [Salmonella enterica subsp. enterica ... gi\|194445441, gi... - gi\|194445441\|ref\|YP_002043622.1\| transcriptional repressor NsrR [Salmonella enterica subsp. enterica... gi\|62130446, gi\|... - gi\|62182813\|ref\|YP_219230.1\| putative negative regulator [Salmonella enterica subsp. enterica serova...	169.0	[0..2]	[141..23]
NSRR_SALCH - HTH-type transcriptional repressor NsrR OS=Salmonella choleraesuis (strain SC-B67) GN=nsrR PE=3 SV=2 NSRR_SALPA - HTH-type transcriptional repressor NsrR OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=nsr... NSRR_SALPB - HTH-type transcriptional repressor NsrR OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=n... NSRR_SALTY - HTH-type transcriptional repressor NsrR OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 7007... NSRR_SALG2 - HTH-type transcriptional repressor NsrR OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=nsr... NSRR_SALEP - HTH-type transcriptional repressor NsrR OS=Salmonella enteritidis PT4 (strain P125109) GN=nsrR PE=3 ... lcl\|NC_016856.1_... - [gene=yjeB] [protein=transcriptional repressor NsrR] [protein_id=YP_005240680.1] [location=4623431..... gi\|200387819, gi... - gi\|200387819\|ref\|ZP_03214431.1\| transcriptional repressor NsrR [Salmonella enterica subsp. enterica ... gi\|204927167, gi... - gi\|204927167\|ref\|ZP_03218369.1\| transcriptional repressor NsrR [Salmonella enterica subsp. enterica ... NSRR_SALA4 - HTH-type transcriptional repressor NsrR OS=Salmonella agona (strain SL483) GN=nsrR PE=3 SV=1 NSRR_SALPK - HTH-type transcriptional repressor NsrR OS=Salmonella paratyphi A (strain AKU_12601) GN=nsrR PE=3 SV... gi\|194470152, gi... - gi\|194470152\|ref\|ZP_03076136.1\| transcriptional repressor NsrR [Salmonella enterica subsp. enterica ... NSRR_SALSV - HTH-type transcriptional repressor NsrR OS=Salmonella schwarzengrund (strain CVM19633) GN=nsrR PE=3 ... gi\|205348036, gi... - gi\|205348036\|gb\|EDZ34667.1\| transcriptional repressor NsrR [Salmonella enterica subsp. enterica sero... NSRR_SALHS - HTH-type transcriptional repressor NsrR OS=Salmonella heidelberg (strain SL476) GN=nsrR PE=3 SV=1 gi\|197287648, gi... - gi\|197287648\|gb\|EDY27039.1\| transcriptional repressor NsrR [Salmonella enterica subsp. enterica sero... gi\|168245155, gi... - gi\|205336063\|gb\|EDZ22827.1\| transcriptional repressor NsrR [Salmonella enterica subsp. enterica sero... gi\|205321871, gi... - gi\|205321871\|gb\|EDZ09710.1\| transcriptional repressor NsrR [Salmonella enterica subsp. enterica sero... gi\|168231405, gi... - gi\|205334382\|gb\|EDZ21146.1\| transcriptional repressor NsrR [Salmonella enterica subsp. enterica sero... NSRR_SALPA - HTH-type transcriptional repressor NsrR OS=Salmonella paratyphi A GN=nsrR PE=3 SV=1 NSRR_SALCH - HTH-type transcriptional repressor nsrR OS=Salmonella choleraesuis GN=nsrR PE=3 SV=2 NSRR_SALTY - HTH-type transcriptional repressor nsrR OS=Salmonella typhimurium GN=nsrR PE=3 SV=1 NSRR_SALPB - HTH-type transcriptional repressor nsrR OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=n... NSRR_SALCH - HTH-type transcriptional repressor NsrR OS=Salmonella choleraesuis GN=nsrR PE=3 SV=2 gi\|238910525 - gi\|238910525\|ref\|ZP_04654362.1\| transcriptional repressor NsrR [Salmonella enterica subsp. enterica ... NSRR_SALTY - HTH-type transcriptional repressor NsrR OS=Salmonella typhimurium GN=nsrR PE=3 SV=1	167.0	[0..1]	[141..1]
NSRR_SALTI - HTH-type transcriptional repressor nsrR OS=Salmonella typhi GN=nsrR PE=3 SV=1 gi\|213428666 - gi\|213428666\|ref\|ZP_03361416.1\| transcriptional repressor NsrR [Salmonella enterica subsp. enterica ... gi\|213418156 - gi\|213418156\|ref\|ZP_03351222.1\| transcriptional repressor NsrR [Salmonella enterica subsp. enterica ... gi\|213052276 - gi\|213052276\|ref\|ZP_03345154.1\| transcriptional repressor NsrR [Salmonella enterica subsp. enterica ... gi\|213981245 - gi\|213981245\|ref\|ZP_03408504.1\| transcriptional repressor NsrR [Salmonella enterica subsp. enterica ... gi\|213852964 - gi\|213852964\|ref\|ZP_03382496.1\| transcriptional repressor NsrR [Salmonella enterica subsp. enterica ... gi\|213648975 - gi\|213648975\|ref\|ZP_03379028.1\| transcriptional repressor NsrR [Salmonella enterica subsp. enterica ... gi\|213582913 - gi\|213582913\|ref\|ZP_03364739.1\| transcriptional repressor NsrR [Salmonella enterica subsp. enterica ... NSRR_SALTI - HTH-type transcriptional repressor NsrR OS=Salmonella typhi GN=nsrR PE=3 SV=1 gi\|16763186 - gi\|16763186\|ref\|NP_458803.1\| transcriptional repressor NsrR [Salmonella enterica subsp. enterica ser... gi\|29144665, gi\|... - gi\|29144665\|ref\|NP_808007.1\| transcriptional repressor NsrR [Salmonella enterica subsp. enterica ser... gi\|214003354 - gi\|214003354\|ref\|ZP_03414089.1\| transcriptional repressor NsrR [Salmonella enterica subsp. enterica ...	166.0	[0..1]	[141..1]
gi\|77973969, gi\|... - gi\|77973969\|ref\|ZP_00829512.1\| COG1959: Predicted transcriptional regulator [Yersinia frederiksenii ...	166.0	[0..1]	[141..1]
NSRR_SHIB3 - HTH-type transcriptional repressor NsrR OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) ...	165.0	[0..1]	[141..1]
gi\|89102913 - gi\|89102913\|ref\|ZP_01175515.1\| COG1959: Predicted transcriptional regulator [Yersinia pestis biovar ... NSRR_YERPS - HTH-type transcriptional repressor NsrR OS=Yersinia pseudotuberculosis GN=nsrR PE=3 SV=1 NSRR_YERPA - HTH-type transcriptional repressor NsrR OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=nsrR PE=3... NSRR_YERPN - HTH-type transcriptional repressor NsrR OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=nsrR PE=... gi\|229706323, gi... - gi\|229836639\|ref\|ZP_04456805.1\| DNA-binding transcriptional regulator [Yersinia pestis Pestoides A],... gi\|150260577, gi... - gi\|150260577\|ref\|ZP_01917305.1\| hypothetical protein YPE_2889 [Yersinia pestis CA88-4125], gi\|149289... gi\|229840251, gi... - gi\|229840251\|ref\|ZP_04460410.1\| DNA-binding transcriptional regulator [Yersinia pestis biovar Orient... gi\|229690639, gi... - gi\|229842329\|ref\|ZP_04462484.1\| DNA-binding transcriptional regulator [Yersinia pestis biovar Orient... gi\|167470114 - gi\|167470114\|ref\|ZP_02334818.1\| nitrite-sensitive repressor NsrR [Yersinia pestis FV-1] gi\|161511445 - gi\|161511445\|ref\|NP_991928.2\| transcriptional repressor NsrR [Yersinia pestis biovar Microtus str. 9... gi\|77632977 - gi\|77632977\|ref\|ZP_00795138.1\| COG1959: Predicted transcriptional regulator [Yersinia pestis Angola] NSRR_YERP3 - HTH-type transcriptional repressor NsrR OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 3175... NSRR_YERPS - HTH-type transcriptional repressor NsrR OS=Yersinia pseudotuberculosis serotype I (strain IP32953) G... NSRR_YERPE - HTH-type transcriptional repressor NsrR OS=Yersinia pestis GN=nsrR PE=3 SV=1 gi\|115346193, gi... - gi\|218927582\|ref\|YP_002345457.1\| transcriptional repressor NsrR [Yersinia pestis CO92], gi\|16120714\|... gi\|161484881 - gi\|161484881\|ref\|NP_667973.2\| transcriptional repressor NsrR [Yersinia pestis KIM]	165.0	[0..1]	[141..1]
gi\|22124550, gi\|... - gi\|22124550\|ref\|NP_667973.1\| hypothetical protein y0636 [Yersinia pestis KIM], gi\|21957349\|gb\|AAM842... gi\|45440389, gi\|... - gi\|45440389\|ref\|NP_991928.1\| Predicted transcriptional regulator [Yersinia pestis biovar Microtus st...	164.0	[0..2]	[141..19]
gi\|162352146, gi... - gi\|162419331\|ref\|YP_001605273.1\| transcriptional repressor NsrR [Yersinia pestis Angola], gi\|1623521... gi\|165926673, gi... - gi\|165926673\|ref\|ZP_02222505.1\| nitrite-sensitive repressor NsrR [Yersinia pestis biovar Orientalis ... gi\|165915645, gi... - gi\|165936529\|ref\|ZP_02225097.1\| nitrite-sensitive repressor NsrR [Yersinia pestis biovar Orientalis ... gi\|165989214, gi... - gi\|166011855\|ref\|ZP_02232753.1\| nitrite-sensitive repressor NsrR [Yersinia pestis biovar Antiqua str... gi\|166214016, gi... - gi\|166214016\|ref\|ZP_02240051.1\| nitrite-sensitive repressor NsrR [Yersinia pestis biovar Antiqua str... gi\|167400661, gi... - gi\|167400661\|ref\|ZP_02306170.1\| nitrite-sensitive repressor NsrR [Yersinia pestis biovar Antiqua str... gi\|167418774, gi... - gi\|167418774\|ref\|ZP_02310527.1\| nitrite-sensitive repressor NsrR [Yersinia pestis biovar Orientalis ... gi\|167057411, gi... - gi\|167423241\|ref\|ZP_02314994.1\| nitrite-sensitive repressor NsrR [Yersinia pestis biovar Mediaevalis... gi\|170026007, gi... - gi\|170026007\|ref\|YP_001722512.1\| transcriptional repressor NsrR [Yersinia pseudotuberculosis YPIII],... gi\|186696817, gi... - gi\|186893791\|ref\|YP_001870903.1\| transcriptional repressor NsrR [Yersinia pseudotuberculosis PB1/+],... gi\|108813452, gi... - gi\|108813452\|ref\|YP_649219.1\| hypothetical protein YPN_3292 [Yersinia pestis Nepal516], gi\|108777100... gi\|108781808, gi... - gi\|108809895\|ref\|YP_653811.1\| hypothetical protein YPA_3905 [Yersinia pestis Antiqua], gi\|108781808\|... gi\|117675078 - gi\|117675078\|ref\|ZP_01498136.1\| hypothetical protein YpseI_02003310 [Yersinia pseudotuberculosis IP ... gi\|145600842, gi... - gi\|145600842\|ref\|YP_001164918.1\| transcriptional repressor NsrR [Yersinia pestis Pestoides F], gi\|14...	164.0	[0..2]	[141..15]
gi\|251787427, gi... - gi\|251787427\|ref\|YP_003001731.1\| hypothetical protein B21_04007 [Escherichia coli BL21], gi\|24237970... gi\|124500679, gi... - gi\|124528237\|ref\|ZP_01699561.1\| transcriptional regulator, BadM/Rrf2 family [Escherichia coli B], gi... gi\|253976008, gi... - gi\|254164107\|ref\|YP_003047215.1\| predicted DNA-binding transcriptional regulator [Escherichia coli B... gi\|253980164, gi... - gi\|254290857\|ref\|YP_003056605.1\| predicted DNA-binding transcriptional regulator [Escherichia coli B... NSRR_ECO8A - HTH-type transcriptional repressor NsrR OS=Escherichia coli O8 (strain IAI1) GN=nsrR PE=3 SV=1 NSRR_ECOSE - HTH-type transcriptional repressor NsrR OS=Escherichia coli (strain SE11) GN=nsrR PE=3 SV=1 NSRR_ECOHS - HTH-type transcriptional repressor NsrR OS=Escherichia coli O9:H4 (strain HS) GN=nsrR PE=3 SV=1 NSRR_ECO24 - HTH-type transcriptional repressor NsrR OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=nsrR... gi\|194439542, gi... - gi\|83585084\|ref\|ZP_00923737.1\| COG1959: Predicted transcriptional regulator [Escherichia coli 101-1]... NSRR_ECOLC - HTH-type transcriptional repressor NsrR OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) G...	163.0	[0..1]	[141..1]
gi\|49237250, gi\|... - gi\|83590489\|ref\|YP_430498.1\| BadM/Rrf2 family transcriptional regulator [Moorella thermoacetica ATCC...	163.0	[0..1]	[136..1]

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Predicted Domain #1

Region A:
Residues: [1-141]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQLTSFTDYG LRALIYMASL PEGRMTSISE VTDVYGVSRN HMVKIINQLS RAGYVTAVRG  60
   61 KNGGIRLGKP ASAIRIGDVV RELEPLSLVN CSSEFCHITP ACRLKQALSK AVQSFLTELD 120
  121 NYTLADLVEE NQPLYKLLLV E

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	23.39794
Match:	1ylfA
Description:	X-ray crystal structure of BC1842 protein from Bacillus cereus, a member of the Rrf2 family of putative transcription regulators.
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transcription regulator activity	3.98990675336286	bayes_pls_golite062009
DNA binding	3.4273272886116	bayes_pls_golite062009
nucleic acid binding	3.38054693035398	bayes_pls_golite062009
transcription factor activity	2.80110428028438	bayes_pls_golite062009
binding	2.18911933843505	bayes_pls_golite062009
transcription activator activity	0.53294679084865	bayes_pls_golite062009
sequence-specific DNA binding	0.53285802828572	bayes_pls_golite062009
transcription repressor activity	0.513853050429619	bayes_pls_golite062009
protein binding	0.035220363090062	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: