YRC Public Data Repository - Protein Structure Prediction

Protein:	YHBC_ECOLI
Organism:	Escherichia coli
Length:	152 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YHBC_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|27362892 - gi\|27362892\|gb\|AAN86998.1\| YhbC-like protein [Pectobacterium carotovorum subsp. carotovorum]	214.0	[0..1]	[152..40]
RIMP_SALAR - Ribosome maturation factor RimP OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) G... RIMP_SALPC - Ribosome maturation factor RimP OS=Salmonella paratyphi C (strain RKS4594) GN=rimP PE=3 SV=2 RIMP_SALPK - Ribosome maturation factor RimP OS=Salmonella paratyphi A (strain AKU_12601) GN=rimP PE=3 SV=2 YHBC_SALCH - UPF0090 protein yhbC OS=Salmonella choleraesuis GN=yhbC PE=3 SV=2 RIMP_SALEP - Ribosome maturation factor RimP OS=Salmonella enteritidis PT4 (strain P125109) GN=rimP PE=3 SV=2 YHBC_SALPA, RIMP... - UPF0090 protein yhbC OS=Salmonella paratyphi A GN=yhbC PE=3 SV=2, Ribosome maturation factor rimP OS... RIMP_SALPB - Ribosome maturation factor rimP OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=rimP PE=3... RIMP_SALPA - Ribosome maturation factor RimP OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=rimP PE=3 S... RIMP_SALCH - Ribosome maturation factor RimP OS=Salmonella choleraesuis (strain SC-B67) GN=rimP PE=3 SV=2 RIMP_SALTY - Ribosome maturation factor RimP OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=r... RIMP_SALPB - Ribosome maturation factor RimP OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=rimP PE=3... YHBC_SALTY - UPF0090 protein yhbC OS=Salmonella typhimurium GN=yhbC PE=3 SV=1 YHBC_SALTI - UPF0090 protein yhbC OS=Salmonella typhi GN=yhbC PE=3 SV=1 RIMP_SALCH - Ribosome maturation factor rimP OS=Salmonella choleraesuis GN=rimP PE=3 SV=2 RIMP_SALTY - Ribosome maturation factor rimP OS=Salmonella typhimurium GN=rimP PE=3 SV=1 RIMP_SALTI - Ribosome maturation factor RimP OS=Salmonella typhi GN=rimP PE=3 SV=1	212.0	[0..1]	[152..1]
RIMP_SHIBS - Ribosome maturation factor RimP OS=Shigella boydii serotype 4 (strain Sb227) GN=rimP PE=3 SV=1	210.0	[0..1]	[152..1]
gi\|161367518 - gi\|161367518\|ref\|NP_289746.2\| hypothetical protein Z4531 [Escherichia coli O157:H7 EDL933] gi\|89109935, gi\|... - gi\|89109935\|ref\|AP_003715.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|856... RIMP_ECO7I - Ribosome maturation factor RimP OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=rimP PE=3 SV=1 RIMP_ECO55 - Ribosome maturation factor RimP OS=Escherichia coli (strain 55989 / EAEC) GN=rimP PE=3 SV=1 EG11179 - ribosome maturation factor for 30S subunits / Factor required for maturation of 30S ribosomal subuni... RIMP_ECO81 - Ribosome maturation factor RimP OS=Escherichia coli O81 (strain ED1a) GN=rimP PE=3 SV=1 RIMP_ECO45 - Ribosome maturation factor RimP OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=rimP PE=3 SV=1 RIMP_ECO8A - Ribosome maturation factor RimP OS=Escherichia coli O8 (strain IAI1) GN=rimP PE=3 SV=1 gi\|229597230 - gi\|229597230\|ref\|YP_001723532.2\| hypothetical protein EcolC_0528 [Escherichia coli ATCC 8739] RIMP_ESCF3 - Ribosome maturation factor RimP OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-... EG11179 - ribosome maturation factor for 30S subunits / Factor required for maturation of 30S ribosomal subuni... gi\|195938390 - gi\|195938390\|ref\|ZP_03083772.1\| hypothetical protein EscherichcoliO157_18476 [Escherichia coli O157:... sp\|P0A8A8\|RIMP_ECOLI - Ribosome maturation factor rimP OS=Escherichia coli (strain K12) GN=rimP PE=1 SV=2 gi\|188492035, gi... - gi\|188492035\|ref\|ZP_02999305.1\| conserved hypothetical protein [Escherichia coli 53638], gi\|18848723... RIMP_SHIB3 - Ribosome maturation factor RimP OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=rimP ... gi\|254289864, gi... - gi\|254289864\|ref\|YP_003055612.1\| hypothetical protein ECD_03037 [Escherichia coli BL21(DE3)], gi\|253... RIMP_ECODH - Ribosome maturation factor RimP OS=Escherichia coli (strain K12 / DH10B) GN=rimP PE=3 SV=1 gi\|253975015, gi... - gi\|254163114\|ref\|YP_003046222.1\| hypothetical protein ECB_03037 [Escherichia coli B str. REL606], gi... gi\|124525922, gi... - gi\|124525922\|ref\|ZP_01697927.1\| protein of unknown function DUF150 [Escherichia coli B], gi\|12450202... gi\|162139721 - gi\|162139721\|ref\|NP_312078.3\| hypothetical protein ECs4051 [Escherichia coli O157:H7 str. Sakai] gi\|242378715, gi... - gi\|251786442\|ref\|YP_003000746.1\| hypothetical protein B21_02988 [Escherichia coli BL21], gi\|24237871... gi\|161986442 - gi\|161986442\|ref\|YP_312126.2\| hypothetical protein SSON_3316 [Shigella sonnei Ss046] gi\|229775958 - gi\|229775958\|ref\|YP_858789.2\| hypothetical protein APECO1_3260 [Escherichia coli APEC O1] gi\|161950037 - gi\|161950037\|ref\|YP_404833.2\| hypothetical protein SDY_3349 [Shigella dysenteriae Sd197] gi\|161486428 - gi\|161486428\|ref\|NP_838681.2\| hypothetical protein S3428 [Shigella flexneri 2a str. 2457T] RIMP_ECOHS - Ribosome maturation factor RimP OS=Escherichia coli O9:H4 (strain HS) GN=rimP PE=3 SV=1 gi\|161486109 - gi\|161486109\|ref\|NP_755794.2\| hypothetical protein c3927 [Escherichia coli CFT073] RIMP_ECO24 - Ribosome maturation factor RimP OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=rimP PE=3 SV... gi\|161485816 - gi\|161485816\|ref\|NP_708971.3\| hypothetical protein SF3211 [Shigella flexneri 2a str. 301] gi\|254795121, gi... - gi\|254795121\|ref\|YP_003079958.1\| hypothetical protein ECSP_4145 [Escherichia coli O157:H7 str. TW143... RIMP_ECOL5 - Ribosome maturation factor RimP OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=rimP PE=3 SV=1 RIMP_SHIF8 - Ribosome maturation factor RimP OS=Shigella flexneri serotype 5b (strain 8401) GN=rimP PE=3 SV=1 RIMP_ECOLU - Ribosome maturation factor RimP OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=rimP PE=3...	210.0	[0..3]	[152..1]
gi\|238727620, gi... - gi\|77978625\|ref\|ZP_00834052.1\| COG0779: Uncharacterized protein conserved in bacteria [Yersinia inte... gi\|229679646, gi... - gi\|229903876\|ref\|ZP_04518989.1\| conserved protein [Yersinia pestis Nepal516], gi\|229679646\|gb\|EEO757... gi\|77961867 - gi\|77961867\|ref\|ZP_00825696.1\| COG0779: Uncharacterized protein conserved in bacteria [Yersinia moll... gi\|77958789 - gi\|77958789\|ref\|ZP_00822817.1\| COG0779: Uncharacterized protein conserved in bacteria [Yersinia berc... gi\|117675033, gi... - gi\|77631475\|ref\|ZP_00794061.1\| COG0779: Uncharacterized protein conserved in bacteria [Yersinia pseu... RIMP_YERPS - Ribosome maturation factor RimP OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=rimP P... gi\|115349123, gi... - gi\|16123644\|ref\|NP_406957.1\| hypothetical protein YPO3498 [Yersinia pestis CO92], gi\|15981422\|emb\|CA... RIMP_YERPE - Ribosome maturation factor RimP OS=Yersinia pestis GN=rimP PE=3 SV=1 gi\|238724379, gi... - gi\|77974017\|ref\|ZP_00829560.1\| COG0779: Uncharacterized protein conserved in bacteria [Yersinia fred... gi\|149288912, gi... - gi\|153997275\|ref\|ZP_02022375.1\| hypothetical protein YPE_3717 [Yersinia pestis CA88-4125], gi\|149288... Y478_YERPS, RIMP... - UPF0090 protein YPTB0478 OS=Yersinia pseudotuberculosis GN=YPTB0478 PE=3 SV=1, Ribosome maturation f... gi\|229695516, gi... - gi\|229839150\|ref\|ZP_04459309.1\| conserved protein [Yersinia pestis biovar Orientalis str. PEXU2], gi... gi\|229896639, gi... - gi\|229896639\|ref\|ZP_04511806.1\| conserved protein [Yersinia pestis Pestoides A], gi\|229700417\|gb\|EEO... gi\|229899714, gi... - gi\|229899714\|ref\|ZP_04514855.1\| conserved protein [Yersinia pestis biovar Orientalis str. India 195]...	209.0	[0..1]	[152..1]
gi\|75855109, gi\|... - gi\|75855109\|ref\|ZP_00762771.1\| COG0779: Uncharacterized protein conserved in bacteria [Vibrio sp. Ex...	209.0	[0..3]	[152..1]
gi\|205360600, gi... - gi\|205360600\|ref\|ZP_02684674.2\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|205359197, gi... - gi\|205359197\|ref\|ZP_02668054.2\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|205331278, gi... - gi\|205357561\|ref\|ZP_02571247.2\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|205357196, gi... - gi\|205357196\|ref\|ZP_02345817.2\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|204928262, gi... - gi\|204928262\|ref\|ZP_03219462.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|197301026, gi... - gi\|197301026\|ref\|ZP_02663047.2\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|197264321, gi... - gi\|197264321\|ref\|ZP_03164395.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... RIMP_SALA4 - Ribosome maturation factor RimP OS=Salmonella agona (strain SL483) GN=rimP PE=3 SV=1 gi\|62129432, gi\|... - gi\|62181799\|ref\|YP_218216.1\| hypothetical protein SC3229 [Salmonella enterica subsp. enterica serova... gi\|195633168, gi... - gi\|195873562\|ref\|ZP_02697406.2\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... RIMP_SALHS - Ribosome maturation factor RimP OS=Salmonella heidelberg (strain SL476) GN=rimP PE=3 SV=1 RIMP_SALNS - Ribosome maturation factor RimP OS=Salmonella newport (strain SL254) GN=rimP PE=3 SV=1	209.0	[0..1]	[152..3]
RIMP_YERPB - Ribosome maturation factor RimP OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=rimP PE... gi\|218930512 - gi\|218930512\|ref\|YP_002348387.1\| hypothetical protein YPO3498 [Yersinia pestis CO92] RIMP_YERPP - Ribosome maturation factor RimP OS=Yersinia pestis (strain Pestoides F) GN=rimP PE=3 SV=1 gi\|229294897 - gi\|229294897\|ref\|YP_001402552.2\| hypothetical protein YpsIP31758_3598 [Yersinia pseudotuberculosis I... RIMP_YERPN - Ribosome maturation factor RimP OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=rimP PE=3 SV=1 gi\|161484876 - gi\|161484876\|ref\|NP_668023.2\| hypothetical protein y0686 [Yersinia pestis KIM] RIMP_YERPA - Ribosome maturation factor RimP OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=rimP PE=3 SV=1 gi\|161511440 - gi\|161511440\|ref\|NP_991978.2\| hypothetical protein YP_0585 [Yersinia pestis biovar Microtus str. 910... gi\|161760591 - gi\|161760591\|ref\|YP_069021.2\| hypothetical protein YPTB0478 [Yersinia pseudotuberculosis IP 32953] RIMP_YERPG - Ribosome maturation factor RimP OS=Yersinia pestis bv. Antiqua (strain Angola) GN=rimP PE=3 SV=1 gi\|166010175, gi... - gi\|166010175\|ref\|ZP_02231073.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|166961386, gi... - gi\|167420580\|ref\|ZP_02312333.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st... gi\|167423588, gi... - gi\|167423588\|ref\|ZP_02315341.1\| conserved hypothetical protein [Yersinia pestis biovar Mediaevalis s... RIMP_YERPY - Ribosome maturation factor RimP OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=rimP P...	209.0	[0..3]	[152..1]
gi\|189010333, gi... - gi\|189010333\|ref\|ZP_02806320.2\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4076... gi\|189401946, gi... - gi\|189401946\|ref\|ZP_02779158.2\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4401... gi\|187775784, gi... - gi\|187775784\|ref\|ZP_02798170.2\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4196... gi\|188024835, gi... - gi\|188024835\|ref\|ZP_02774257.2\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4113... gi\|170518541, gi... - gi\|170680823\|ref\|YP_001745444.1\| hypothetical protein EcSMS35_3466 [Escherichia coli SMS-3-5], gi\|17... gi\|91074166, gi\|... - gi\|91212592\|ref\|YP_542578.1\| hypothetical protein UTI89_C3601 [Escherichia coli UTI89], gi\|91074166\|... gi\|26249754, gi\|... - gi\|26249754\|ref\|NP_755794.1\| hypothetical protein c3927 [Escherichia coli CFT073], gi\|26110182\|gb\|AA... gi\|24053642, gi\|... - ref\|NP_708971.1\| hypothetical protein SF3211 [Shigella flexneri 2a str. 301], gb\|AAN44678.1\| orf, c... gi\|209400717, gi... - gi\|209400717\|ref\|YP_002272641.1\| hypothetical protein ECH74115_4491 [Escherichia coli O157:H7 str. E... gi\|217319698, gi... - gi\|217327331\|ref\|ZP_03443414.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. TW1458... gi\|208733630, gi... - gi\|208812353\|ref\|ZP_03253682.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4045... gi\|208740917, gi... - gi\|208820794\|ref\|ZP_03261114.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4042... gi\|194438776, gi... - gi\|194438776\|ref\|ZP_03070862.1\| conserved hypothetical protein [Escherichia coli 101-1], gi\|19442224... gi\|208728274, gi... - gi\|208808473\|ref\|ZP_03250810.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4206... gi\|192959364, gi... - gi\|193067407\|ref\|ZP_03048375.1\| conserved hypothetical protein [Escherichia coli E110019], gi\|192959... gi\|194430231, gi... - gi\|194430231\|ref\|ZP_03062729.1\| conserved hypothetical protein [Escherichia coli B171], gi\|194411732... gi\|190901899, gi... - gi\|191168030\|ref\|ZP_03029830.1\| conserved hypothetical protein [Escherichia coli B7A], gi\|190901899\|... gi\|193062091, gi... - gi\|193062091\|ref\|ZP_03043187.1\| conserved hypothetical protein [Escherichia coli E22], gi\|192932311\|... gi\|189404788, gi... - gi\|189404788\|ref\|ZP_02811062.2\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869]... gi\|189405548, gi... - gi\|189405548\|ref\|ZP_02822778.2\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508]... gi\|226899117, gi... - gi\|237706077\|ref\|ZP_04536558.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22689... gi\|189403296, gi... - gi\|189403296\|ref\|ZP_02794595.2\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4486... gi\|189367607, gi... - gi\|189404085\|ref\|ZP_02787144.2\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501...	208.0	[0..1]	[152..3]
YO58_VIBPA, Y245... - (Q87M00) Hypothetical UPF0090 protein VP2458, UPF0090 protein VP2458 OS=Vibrio parahaemolyticus GN=V... RIMP_VIBPA - Ribosome maturation factor RimP OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=r... gi\|153838301, gi... - gi\|153838301\|ref\|ZP_01990968.1\| protein YhbC [Vibrio parahaemolyticus AQ3810], gi\|149748290\|gb\|EDM59...	208.0	[0..3]	[152..1]

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Predicted Domain #1

Region A:
Residues: [1-152]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLSTLEQKL TEMITAPVEA LGFELVGIEF IRGRTSTLRI YIDSEDGINV DDCADVSHQV  60
   61 SAVLDVEDPI TVAYNLEVSS PGLDRPLFTA EHYARFVGEE VTLVLRMAVQ NRRKWQGVIK 120
  121 AVDGEMITVT VEGKDEVFAL SNIQKANLVP HF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	35.0
Match:	1ib8A
Description:	Hypothetical protein SP14.3 (SP0552)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.922032774883544	bayes_pls_golite062009
protein binding	0.45609094187375	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: