YRC Public Data Repository - Protein Structure Prediction

Protein:	YGJH_ECOLI
Organism:	Escherichia coli
Length:	110 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YGJH_ECOLI.

Description	E-value	Query Range	Subject Range
SYM_VIBVU - Methionine--tRNA ligase OS=Vibrio vulnificus (strain CMCP6) GN=metG PE=3 SV=2 SYM_VIBVU - Methionine--tRNA ligase OS=Vibrio vulnificus GN=metG PE=3 SV=2	150.0	[0..2]	[110..583]
SYM_VIBVY - Methionine--tRNA ligase OS=Vibrio vulnificus (strain YJ016) GN=metG PE=3 SV=1	150.0	[0..2]	[110..583]
gi\|27362498, gi\|... - gi\|27366297\|ref\|NP_761825.1\| methionyl-tRNA synthetase [Vibrio vulnificus CMCP6], gi\|27362498\|gb\|AAO...	150.0	[0..2]	[110..553]
gi\|89073403, gi\|... - gi\|89073403\|ref\|ZP_01159927.1\| methionyl-tRNA synthetase [Photobacterium sp. SKA34], gi\|89050890\|gb\|...	147.0	[0..2]	[110..574]
gi\|90579105, gi\|... - gi\|90579105\|ref\|ZP_01234915.1\| methionyl-tRNA synthetase [Vibrio angustum S14], gi\|90439938\|gb\|EAS65...	147.0	[0..2]	[110..574]
SYM_PHOPR - Methionine--tRNA ligase OS=Photobacterium profundum GN=metG PE=3 SV=1 SYM_PHOPR - Methionine--tRNA ligase OS=Photobacterium profundum (strain SS9) GN=metG PE=3 SV=1	146.0	[0..2]	[110..573]
gi\|90413229, gi\|... - gi\|90413229\|ref\|ZP_01221224.1\| methionyl-tRNA synthetase [Photobacterium profundum 3TCK], gi\|9032578...	145.0	[0..2]	[110..573]
gi\|116185158, gi... - gi\|75855824\|ref\|ZP_00763465.1\| COG0143: Methionyl-tRNA synthetase [Vibrio sp. Ex25], gi\|116185158\|re...	145.0	[0..2]	[110..572]
gi\|91227376, gi\|... - gi\|91227376\|ref\|ZP_01261765.1\| methionyl-tRNA synthetase [Vibrio alginolyticus 12G01], gi\|91188640\|g...	145.0	[0..2]	[110..572]
SYM_THICR - Methionine--tRNA ligase OS=Thiomicrospira crunogena (strain XCL-2) GN=metG PE=3 SV=1	144.0	[0..2]	[109..573]

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Predicted Domain #1

Region A:
Residues: [1-110]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METVAYADFA RLEMRVGKIV EVKRHENADK LYIVQVDVGQ KTLQTVTSLV PYYSEEELMG  60
   61 KTVVVLCNLQ KAKMRGETSE CMLLCAETDD GSESVLLTPE RMMPAGVRVV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	29.522879
Match:	1pxfA
Description:	Structure-specific tRNA-binding protein TRBP111
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.116527669399881	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: