YRC Public Data Repository - Protein Structure Prediction

Protein:	YGAD_ECOLI
Organism:	Escherichia coli
Length:	165 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YGAD_ECOLI.

Description	E-value	Query Range	Subject Range
CINA_HALOH - Putative competence-damage inducible protein OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM...	233.0	[0..1]	[162..248]
CINA_THETN - Putative competence-damage inducible protein OS=Thermoanaerobacter tengcongensis GN=cinA PE=3 SV=1 CINA_CALS4 - Putative competence-damage inducible protein OS=Caldanaerobacter subterraneus subsp. tengcongensis (... gi\|254479113, gi... - gi\|254479113\|ref\|ZP_05092465.1\| competence/damage-inducible protein CinA N-terminal domain, putative...	228.0	[0..1]	[164..247]
CINA_SYMTH - Putative competence-damage inducible protein OS=Symbiobacterium thermophilum (strain T / IAM 14863) ... CINA_SYMTH - Putative competence-damage inducible protein OS=Symbiobacterium thermophilum GN=cinA PE=3 SV=1	225.0	[0..1]	[163..253]
CINA_CALS8 - Putative competence-damage inducible protein OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43...	224.0	[0..1]	[163..249]
CINAL_THEMA, CIN... - CinA-like protein - Thermotoga maritima, CinA-like protein OS=Thermotoga maritima GN=TM_0703 PE=3 SV... CINAL_THEMA - CinA-like protein OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) GN=TM_070...	223.0	[0..1]	[164..244]
gi\|89334149, gi\|... - gi\|89894701\|ref\|YP_518188.1\| hypothetical protein DSY1955 [Desulfitobacterium hafniense Y51], gi\|893...	223.0	[0..1]	[164..250]
gi\|68208335, gi\|... - gi\|68208335\|ref\|ZP_00560457.1\| Molybdenum cofactor biosynthesis protein:Competence-damaged protein:C...	222.0	[0..1]	[164..250]
CINAL_DESPS - CinA-like protein OS=Desulfotalea psychrophila (strain LSv54 / DSM 12343) GN=DP2957 PE=3 SV=1 CINAL_DESPS - CinA-like protein OS=Desulfotalea psychrophila GN=DP2957 PE=3 SV=1	221.0	[0..1]	[164..250]
gi\|182380080, gi... - gi\|182380080\|gb\|EDT77559.1\| cinA family protein [Clostridium perfringens NCTC 8239], gi\|168217905\|re... CINA_CLOP1 - Putative competence-damage inducible protein OS=Clostridium perfringens (strain ATCC 13124 / DSM 756...	220.0	[0..1]	[163..249]
CINA_CLOPE - Putative competence-damage inducible protein OS=Clostridium perfringens (strain 13 / Type A) GN=cinA... gi\|170715118, gi... - gi\|170715118\|gb\|EDT27300.1\| cinA family protein [Clostridium perfringens CPE str. F4969], gi\|1682133... gi\|169299716, gi... - gi\|169342232\|ref\|ZP_02863315.1\| cinA family protein [Clostridium perfringens C str. JGS1495], gi\|169... gi\|177910023, gi... - gi\|182624813\|ref\|ZP_02952593.1\| putative competence/damage-inducible protein CinA N- domain [Clostri... CINA_CLOPE - Putative competence-damage inducible protein OS=Clostridium perfringens GN=cinA PE=3 SV=1	220.0	[0..1]	[163..249]

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Predicted Domain #1

Region A:
Residues: [1-165]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDSELMQLS EQVGQALKAR GATVTTAESC TGGWVAKVIT DIAGSSAWFE RGFVTYSNEA  60
   61 KAQMIGVREE TLAQHGAVSE PVVVEMAIGA LKAARADYAV SISGIAGPDG GSEEKPVGTV 120
  121 WFAFATARGE GITRRECFSG DRDAVRRQAT AYALQTLWQQ FLQNT

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	44.522879
Match:	2a9sA
Description:	The crystal structure of competence/damage inducible protein CihA from Agrobacterium tumefaciens
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.666293440418936	bayes_pls_golite062009
binding	0.169690822508591	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: