YRC Public Data Repository - Protein Structure Prediction

Protein:	YFGE_ECOLI, HDA_...
Organism:	Escherichia coli
Length:	248 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YFGE_ECOLI, HDA_....

Description	E-value	Query Range	Subject Range
gi\|75761786, gi\|... - gi\|75761786\|ref\|ZP_00741721.1\| Chromosomal replication initiator protein dnaA [Bacillus thuringiensi...	209.0	[0..1]	[247..98]
DNAA_CALS4 - Chromosomal replication initiator protein DnaA OS=Caldanaerobacter subterraneus subsp. tengcongensis... DNAA_THETN - Chromosomal replication initiator protein dnaA OS=Thermoanaerobacter tengcongensis GN=dnaA PE=3 SV=1	208.0	[0..3]	[247..83]
gi\|228583782, gi... - gi\|229199687\|ref\|ZP_04326330.1\| Chromosomal replication initiator protein dnaA [Bacillus cereus m129... DNAA_BACC1 - Chromosomal replication initiator protein DnaA OS=Bacillus cereus (strain ATCC 10987 / NRS 248) GN=d... gi\|229142238, gi... - gi\|229142238\|ref\|ZP_04270762.1\| Chromosomal replication initiator protein dnaA [Bacillus cereus BDRD... DNAA_BACCQ - Chromosomal replication initiator protein DnaA OS=Bacillus cereus (strain Q1) GN=dnaA PE=3 SV=1 DNAA_BACC7 - Chromosomal replication initiator protein DnaA OS=Bacillus cereus (strain AH187) GN=dnaA PE=3 SV=1 gi\|206745871, gi... - gi\|206975777\|ref\|ZP_03236688.1\| chromosomal replication initiator protein DnaA [Bacillus cereus H308...	208.0	[0..1]	[247..79]
DNAA_BACHK - Chromosomal replication initiator protein DnaA OS=Bacillus thuringiensis subsp. konkukian GN=dnaA PE... DNAA_BACAC - Chromosomal replication initiator protein DnaA OS=Bacillus anthracis (strain CDC 684 / NRRL 3495) GN... gi\|190569280, gi... - gi\|190569280\|ref\|ZP_03022174.1\| chromosomal replication initiator protein DnaA [Bacillus anthracis T... gi\|228841581, gi... - gi\|228918101\|ref\|ZP_04081629.1\| Chromosomal replication initiator protein dnaA [Bacillus thuringiens... gi\|196036095, gi... - gi\|196036095\|ref\|ZP_03103495.1\| chromosomal replication initiator protein DnaA [Bacillus cereus W], ... gi\|228930495, gi... - gi\|228930495\|ref\|ZP_04093495.1\| Chromosomal replication initiator protein dnaA [Bacillus thuringiens... gi\|196041966, gi... - gi\|196041966\|ref\|ZP_03109253.1\| chromosomal replication initiator protein DnaA [Bacillus cereus NVH0... gi\|228810494, gi... - gi\|228949211\|ref\|ZP_04111479.1\| Chromosomal replication initiator protein dnaA [Bacillus thuringiens... gi\|196023714, gi... - gi\|196045507\|ref\|ZP_03112738.1\| chromosomal replication initiator protein DnaA [Bacillus cereus 03BB... gi\|229094600, gi... - gi\|229094600\|ref\|ZP_04225667.1\| Chromosomal replication initiator protein dnaA [Bacillus cereus Rock... DNAA_BACC0 - Chromosomal replication initiator protein DnaA OS=Bacillus cereus (strain AH820) GN=dnaA PE=3 SV=1 gi\|229124992, gi... - gi\|229124992\|ref\|ZP_04254166.1\| Chromosomal replication initiator protein dnaA [Bacillus cereus 95/8... gi\|229187718, gi... - gi\|229187718\|ref\|ZP_04314854.1\| Chromosomal replication initiator protein dnaA [Bacillus cereus BGSC... DNAA_BACCZ - Chromosomal replication initiator protein DnaA OS=Bacillus cereus (strain ZK / E33L) GN=dnaA PE=3 SV... DNAA_BACAA - Chromosomal replication initiator protein DnaA OS=Bacillus anthracis (strain A0248) GN=dnaA PE=3 SV=... gi\|254687070 - gi\|254687070\|ref\|ZP_05150928.1\| chromosomal replication initiation protein [Bacillus anthracis str. ... gi\|254724147 - gi\|254724147\|ref\|ZP_05185932.1\| chromosomal replication initiation protein [Bacillus anthracis str. ... gi\|254735164 - gi\|254735164\|ref\|ZP_05192874.1\| chromosomal replication initiation protein [Bacillus anthracis str. ... gi\|165873037, gi... - gi\|165873037\|ref\|ZP_02217658.1\| chromosomal replication initiator protein DnaA [Bacillus anthracis s... gi\|254742127 - gi\|254742127\|ref\|ZP_05199814.1\| chromosomal replication initiation protein [Bacillus anthracis str. ... gi\|167635044, gi... - gi\|167635044\|ref\|ZP_02393361.1\| chromosomal replication initiator protein DnaA [Bacillus anthracis s... gi\|254755963 - gi\|254755963\|ref\|ZP_05207995.1\| chromosomal replication initiation protein [Bacillus anthracis str. ... gi\|167641739, gi... - gi\|167641739\|ref\|ZP_02399982.1\| chromosomal replication initiator protein DnaA [Bacillus anthracis s... gi\|254761357 - gi\|254761357\|ref\|ZP_05213379.1\| chromosomal replication initiation protein [Bacillus anthracis str. ... gi\|170666564, gi... - gi\|170689462\|ref\|ZP_02880652.1\| chromosomal replication initiator protein DnaA [Bacillus anthracis s... gi\|170127515, gi... - gi\|170707519\|ref\|ZP_02897972.1\| chromosomal replication initiator protein DnaA [Bacillus anthracis s... gi\|177655268, gi... - gi\|177655268\|ref\|ZP_02936822.1\| chromosomal replication initiator protein DnaA [Bacillus anthracis s... DNAA_BACAN - Chromosomal replication initiator protein DnaA OS=Bacillus anthracis GN=dnaA PE=3 SV=1 gi\|49183040, gi\|... - gi\|49183040\|ref\|YP_026292.1\| chromosomal replication initiation protein [Bacillus anthracis str. Ste... DNAA_BACHK - Chromosomal replication initiator protein DnaA OS=Bacillus thuringiensis subsp. konkukian (strain 97... gi\|30253517, gi\|... - gi\|30260196\|ref\|NP_842573.1\| chromosomal replication initiation protein [Bacillus anthracis str. Ame... gi\|47525255, gi\|... - gi\|47525255\|ref\|YP_016604.1\| chromosomal replication initiation protein [Bacillus anthracis str. 'Am... gi\|65317469, gi\|... - gi\|65317469\|ref\|ZP_00390428.1\| COG0593: ATPase involved in DNA replication initiation [Bacillus anth...	208.0	[0..1]	[247..79]
gi\|89101119, gi\|... - gi\|89101119\|ref\|ZP_01173955.1\| chromosomal replication initiation protein [Bacillus sp. NRRL B-14911...	207.0	[0..3]	[247..65]
gi\|229181735, gi... - gi\|229181735\|ref\|ZP_04309058.1\| Chromosomal replication initiator protein dnaA [Bacillus cereus 1725... DNAA_BACC4 - Chromosomal replication initiator protein DnaA OS=Bacillus cereus (strain B4264) GN=dnaA PE=3 SV=1 gi\|206970479, gi... - gi\|206970479\|ref\|ZP_03231432.1\| chromosomal replication initiator protein DnaA [Bacillus cereus AH11... DNAA_BACCR - Chromosomal replication initiator protein DnaA OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM ... gi\|228835452, gi... - gi\|228924234\|ref\|ZP_04087505.1\| Chromosomal replication initiator protein dnaA [Bacillus thuringiens... gi\|229051158, gi... - gi\|229051158\|ref\|ZP_04194702.1\| Chromosomal replication initiator protein dnaA [Bacillus cereus AH67... gi\|229072954, gi... - gi\|229072954\|ref\|ZP_04206150.1\| Chromosomal replication initiator protein dnaA [Bacillus cereus F651... gi\|228955739, gi... - gi\|228955739\|ref\|ZP_04117734.1\| Chromosomal replication initiator protein dnaA [Bacillus thuringiens... gi\|228797947, gi... - gi\|228961753\|ref\|ZP_04123356.1\| Chromosomal replication initiator protein dnaA [Bacillus thuringiens... gi\|228635464, gi... - gi\|229148039\|ref\|ZP_04276378.1\| Chromosomal replication initiator protein dnaA [Bacillus cereus BDRD... gi\|228629834, gi... - gi\|229153648\|ref\|ZP_04281824.1\| Chromosomal replication initiator protein dnaA [Bacillus cereus m155... gi\|229112902, gi... - gi\|229112902\|ref\|ZP_04242433.1\| Chromosomal replication initiator protein dnaA [Bacillus cereus Rock... gi\|229130735, gi... - gi\|229130735\|ref\|ZP_04259688.1\| Chromosomal replication initiator protein dnaA [Bacillus cereus BDRD...	207.0	[0..1]	[247..79]
DNAA_CLOB8 - Chromosomal replication initiator protein DnaA OS=Clostridium beijerinckii (strain ATCC 51743 / NCIM...	207.0	[0..26]	[247..110]
DNAA_ALKMQ - Chromosomal replication initiator protein DnaA OS=Alkaliphilus metalliredigens (strain QYMF) GN=dnaA...	207.0	[0..15]	[247..95]
gi\|241884523, gi... - gi\|241903120\|ref\|ZP_04787848.1\| chromosomal replication initiator protein DnaA [Thermoanaerobacter b... DNAA_THEP3 - Chromosomal replication initiator protein DnaA OS=Thermoanaerobacter pseudethanolicus (strain ATCC 3... gi\|242232045, gi... - gi\|242256452\|ref\|ZP_04801343.1\| chromosomal replication initiator protein DnaA [Thermoanaerobacter s... DNAA_THEPX - Chromosomal replication initiator protein DnaA OS=Thermoanaerobacter sp. (strain X514) GN=dnaA PE=3 ...	206.0	[0..3]	[247..83]
DNAA_BACLD - Chromosomal replication initiator protein DnaA OS=Bacillus licheniformis (strain ATCC 14580 / DSM 13...	206.0	[0..7]	[247..91]

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Predicted Domain #1

Region A:
Residues: [1-248]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVNFSRFCEI LVEVSLNTPA QLSLPLYLPD DETFASFWPG DNSSLLAALQ NVLRQEHSGY  60
   61 IYLWAREGAG RSHLLHAACA ELSQRGDAVG YVPLDKRTWF VPEVLDGMEH LSLVCIDNIE 120
  121 CIAGDELWEM AIFDLYNRIL ESGKTRLLIT GDRPPRQLNL GLPDLASRLD WGQIYKLQPL 180
  181 SDEDKLQALQ LRARLRGFEL PEDVGRFLLK RLDREMRTLF MTLDQLDRAS ITAQRKLTIP 240
  241 FVKEILKL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	35.0
Match:	1lv7A
Description:	AAA domain of cell division protein FtsH
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.36550713198424	bayes_pls_golite062009
catalytic activity	0.234613562021476	bayes_pls_golite062009
nucleoside-triphosphatase activity	0.166100211611062	bayes_pls_golite062009
pyrophosphatase activity	0.159702441149605	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	0.149170905385965	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	0.147838751017739	bayes_pls_golite062009
hydrolase activity	0.0436758932827116	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: