YRC Public Data Repository - Protein Structure Prediction

Protein:	YFBH_ECOLI
Organism:	Escherichia coli
Length:	296 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YFBH_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|77959223 - gi\|77959223\|ref\|ZP_00823245.1\| COG0726: Predicted xylanase/chitin deacetylase [Yersinia bercovieri A...	245.0	[0..1]	[294..1]
ARND_YERPG - Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD OS=Yersinia pestis bv.... ARND_YERP3 - Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD OS=Yersinia pseudotube... ARND_YERPS - Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD OS=Yersinia pseudotube... gi\|165927489, gi... - gi\|165927489\|ref\|ZP_02223321.1\| Polysaccharide deacetylase [Yersinia pestis biovar Orientalis str. F... ARND_YERPE - Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD OS=Yersinia pestis GN=... gi\|45441996, gi\|... - gi\|45441996\|ref\|NP_993535.1\| hypothetical protein YP_2206 [Yersinia pestis biovar Microtus str. 9100... gi\|22125813, gi\|... - gi\|22125813\|ref\|NP_669236.1\| hypothetical protein y1920 [Yersinia pestis KIM], gi\|21958740\|gb\|AAM854... gi\|16122639, gi\|... - gi\|218929507\|ref\|YP_002347382.1\| hypothetical protein YPO2419 [Yersinia pestis CO92], gi\|16122639\|re... ARND_YERPS - Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD OS=Yersinia pseudotube... gi\|89105349, gi\|... - gi\|89105349\|ref\|ZP_01177870.1\| COG0726: Predicted xylanase/chitin deacetylase [Yersinia pestis biova... ARND_YERPA - Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD OS=Yersinia pestis bv.... ARND_YERPN - Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD OS=Yersinia pestis bv.... gi\|149365673, gi... - gi\|149365673\|ref\|ZP_01887708.1\| hypothetical protein YPE_0841 [Yersinia pestis CA88-4125], gi\|149292... ARND_YERPP - Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD OS=Yersinia pestis (st... gi\|166210412, gi... - gi\|166210412\|ref\|ZP_02236447.1\| Polysaccharide deacetylase [Yersinia pestis biovar Antiqua str. B420... gi\|166011826, gi... - gi\|166011826\|ref\|ZP_02232724.1\| Polysaccharide deacetylase [Yersinia pestis biovar Antiqua str. E197... gi\|229837944, gi... - gi\|229837944\|ref\|ZP_04458103.1\| conserved protein [Yersinia pestis biovar Orientalis str. PEXU2], gi... gi\|167422175, gi... - gi\|167422175\|ref\|ZP_02313928.1\| Polysaccharide deacetylase [Yersinia pestis biovar Orientalis str. M... gi\|229895104, gi... - gi\|229895104\|ref\|ZP_04510280.1\| conserved protein [Yersinia pestis Pestoides A], gi\|229701866\|gb\|EEO... gi\|167049604, gi... - gi\|167400751\|ref\|ZP_02306257.1\| Polysaccharide deacetylase [Yersinia pestis biovar Antiqua str. UG05... gi\|229898505, gi... - gi\|229898505\|ref\|ZP_04513650.1\| conserved protein [Yersinia pestis biovar Orientalis str. India 195]... gi\|167469207 - gi\|167469207\|ref\|ZP_02333911.1\| Polysaccharide deacetylase [Yersinia pestis FV-1] gi\|167056163, gi... - gi\|167424976\|ref\|ZP_02316729.1\| Polysaccharide deacetylase [Yersinia pestis biovar Mediaevalis str. ... ARND_YERPB - Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD OS=Yersinia pseudotube...	245.0	[0..1]	[294..1]
gi\|77980158 - gi\|77980158\|ref\|ZP_00835573.1\| COG0726: Predicted xylanase/chitin deacetylase [Yersinia intermedia A...	244.0	[0..1]	[294..1]
gi\|77962214 - gi\|77962214\|ref\|ZP_00826037.1\| COG0726: Predicted xylanase/chitin deacetylase [Yersinia mollaretii A...	241.0	[0..1]	[294..1]
gi\|77975265 - gi\|77975265\|ref\|ZP_00830801.1\| COG0726: Predicted xylanase/chitin deacetylase [Yersinia frederikseni...	237.0	[0..1]	[294..1]
ARND_ECO24 - Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD OS=Escherichia coli O1...	235.0	[0..1]	[296..1]
ARND_PHOLL - Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD OS=Photorhabdus lumine... ARND_PHOLL - Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase arnD OS=Photorhabdus lumine...	235.0	[0..1]	[293..1]
gi\|187771045, gi... - gi\|187771045\|gb\|EDU34889.1\| polysaccharide deacetylase domain protein [Escherichia coli O157:H7 str.... gi\|189362862, gi... - gi\|189362862\|gb\|EDU81281.1\| polysaccharide deacetylase domain protein [Escherichia coli O157:H7 str.... gi\|168761303, gi... - gi\|189368316\|gb\|EDU86732.1\| polysaccharide deacetylase domain protein [Escherichia coli O157:H7 str.... gi\|189357672, gi... - gi\|189357672\|gb\|EDU76091.1\| polysaccharide deacetylase domain protein [Escherichia coli O157:H7 str.... gi\|195935635 - gi\|195935635\|ref\|ZP_03081017.1\| hypothetical protein EscherichcoliO157_04112 [Escherichia coli O157:... gi\|168798428, gi... - gi\|189378933\|gb\|EDU97349.1\| polysaccharide deacetylase domain protein [Escherichia coli O157:H7 str.... gi\|189372836, gi... - gi\|189372836\|gb\|EDU91252.1\| polysaccharide deacetylase domain protein [Escherichia coli O157:H7 str.... gi\|168780113, gi... - gi\|189002099\|gb\|EDU71085.1\| polysaccharide deacetylase domain protein [Escherichia coli O157:H7 str.... gi\|188016047, gi... - gi\|188016047\|gb\|EDU54169.1\| polysaccharide deacetylase domain protein [Escherichia coli O157:H7 str.... gi\|15832398, gi\|... - gi\|15832398\|ref\|NP_311171.1\| hypothetical protein ECs3144 [Escherichia coli O157:H7 str. Sakai], gi\|... ARND_ECO5E - Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD OS=Escherichia coli O1... gi\|208738883, gi... - gi\|208818760\|ref\|ZP_03259080.1\| polysaccharide deacetylase domain protein [Escherichia coli O157:H7 ... gi\|254593551, gi... - gi\|254794151\|ref\|YP_003078988.1\| hypothetical protein ECSP_3133 [Escherichia coli O157:H7 str. TW143... gi\|208734222, gi... - gi\|208812945\|ref\|ZP_03254274.1\| polysaccharide deacetylase domain protein [Escherichia coli O157:H7 ... gi\|208806624, gi... - gi\|208806624\|ref\|ZP_03248961.1\| polysaccharide deacetylase domain protein [Escherichia coli O157:H7 ... ARND_ECO57 - Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD OS=Escherichia coli O1... gi\|209765344, gi... - pir\|\|G85865 hypothetical protein Z3514 [imported] - Escherichia coli (strain O157:H7, substrain EDL... gi\|15802805, gi\|... - gi\|15802805\|ref\|NP_288832.1\| hypothetical protein Z3514 [Escherichia coli O157:H7 EDL933], gi\|125166... gi\|217319669, gi... - gi\|217327302\|ref\|ZP_03443385.1\| polysaccharide deacetylase domain protein [Escherichia coli O157:H7 ...	235.0	[0..1]	[296..1]
ARND_SHIB3 - Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD OS=Shigella boydii ser... ARND_SHIBS - Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD OS=Shigella boydii ser...	233.0	[0..1]	[296..1]
ARND_SHIFL - Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD OS=Shigella flexneri G... gi\|30063687, gi\|... - gi\|30063687\|ref\|NP_837858.1\| hypothetical protein S2468 [Shigella flexneri 2a str. 2457T], gi\|300419... gi\|24113632, gi\|... - gi\|24113632\|ref\|NP_708142.1\| hypothetical protein SF2335 [Shigella flexneri 2a str. 301], gi\|2405269...	233.0	[0..1]	[296..1]

Back

Predicted Domain #1

Region A:
Residues: [1-296]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKVGLRIDV DTFRGTREGV PRLLEILSKH NIQASIFFSV GPDNMGRHLW RLVKPQFLWK  60
   61 MLRSNAASLY GWDILLAGTA WPGKEIGHAN ADIIREAAKH HEVGLHAWDH HAWQARSGNW 120
  121 DRQTMIDDIA RGLRTLEEII GQPVTCSAAA GWRADQKVIE AKEAFHLRYN SDCRGAMPFR 180
  181 PLLESGNPGT AQIPVTLPTW DEVIGRDVKA EDFNGWLLNR ILRDKGTPVY TIHAEVEGCA 240
  241 YQHNFVDLLK RAAQEGVTFC PLSELLSETL PLGQVVRGNI AGREGWLGCQ QIAGSR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	43.0
Match:	1z7aA
Description:	Crystal structure of conserved hypothetical protein from Pseudomonas aeruginosa PAO1
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.54926008475976	bayes_pls_golite062009
deacetylase activity	1.07373873416936	bayes_pls_golite062009
hydrolase activity, hydrolyzing O-glycosyl compounds	1.04159714419468	bayes_pls_golite062009
hydrolase activity, acting on glycosyl bonds	0.78725677170464	bayes_pls_golite062009
hydrolase activity	0.7139390771237	bayes_pls_golite062009
mannosidase activity	0.32530435999467	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: