| Protein: | YEHU_ECOLI |
| Organism: | Escherichia coli |
| Length: | 561 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YEHU_ECOLI.
| Description | E-value | Query Range |
Subject Range |
|
|
365.0 | [0..5] | [556..2] |
|
|
364.0 | [0..5] | [556..2] |
|
|
362.0 | [0..5] | [557..6] |
|
|
361.0 | [0..5] | [556..2] |
|
|
360.0 | [0..5] | [556..2] |
|
|
357.0 | [0..5] | [556..2] |
|
|
356.0 | [0..5] | [560..2] |
|
|
354.0 | [0..5] | [559..2] |
|
|
353.0 | [0..5] | [559..2] |
|
|
353.0 | [0..3] | [561..28] |
|
Region A: Residues: [1-130] |
1 11 21 31 41 51
| | | | | |
1 MYDFNLVLLL LQQMCVFLVI AWLMSKTPLF IPLMQVTVRL PHKFLCYIVF SIFCIMGTWF 60
61 GLHIDDSIAN TRAIGAVMGG LLGGPVVGGL VGLTGGLHRY SMGGMTALSC MISTIVEGLL 120
121 GGLVHSILIR
|
| Detection Method: |  |
| Confidence: | 40.481486 |
| Match: | PF07694.3 |
| Description: | No description for PF07694.3 was found. |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [131-331] |
1 11 21 31 41 51
| | | | | |
1 RGRTDKVFNP ITAGAVTFVA EMVQMLIILA IARPYEDAVR LVSNIAAPMM VTNTVGAALF 60
61 MRILLDKRAM FEKYTSAFSA TALKVAASTE GILRQGFNEV NSMKVAQVLY QELDIGAVAI 120
121 TDREKLLAFT GIGDDHHLPG KPISSTYTLK AIETGEVVYA DGNEVPYRCS LHPQCKLGST 180
181 LVIPLRGENQ RVMGTIKLYE A
|
| Detection Method: | |
| Confidence: | 1.24 |
| Match: | 1vhmA |
| Description: | Crystal structure of an hypothetical protein |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 1.95758588715202 | bayes_pls_golite062009 |
| signal transducer activity | 1.13344214754837 | bayes_pls_golite062009 |
| molecular transducer activity | 1.13344214754837 | bayes_pls_golite062009 |
| DNA binding | 0.782169600399986 | bayes_pls_golite062009 |
| nucleic acid binding | 0.68885051853759 | bayes_pls_golite062009 |
| transcription factor activity | 0.627985657557994 | bayes_pls_golite062009 |
| two-component response regulator activity | 0.508776074549631 | bayes_pls_golite062009 |
| receptor activity | 0.397102537009968 | bayes_pls_golite062009 |
| protein binding | 0.337226924882729 | bayes_pls_golite062009 |
| protein histidine kinase activity | 0.195168640304713 | bayes_pls_golite062009 |
| phosphotransferase activity, nitrogenous group as acceptor | 0.0600535298662946 | bayes_pls_golite062009 |
|
Region A: Residues: [332-561] |
1 11 21 31 41 51
| | | | | |
1 KNRLFSSINR TLGEGIAQLL SAQILAGQYE RQKAMLTQSE IKLLHAQVNP HFLFNALNTI 60
61 KAVIRRDSEQ ASQLVQYLST FFRKNLKRPS EFVTLADEIE HVNAYLQIEK ARFQSRLQVN 120
121 IAIPQELSQQ QLPAFTLQPI VENAIKHGTS QLLDTGRVAI SARREGQHLM LEIEDNAGLY 180
181 QPVTNASGLG MNLVDKRLRE RFGDDYGISV ACEPDSYTRI TLRLPWRDEA
|
| Detection Method: | |
| Confidence: | 41.09691 |
| Match: | 2c2aA |
| Description: | Structure of the entire cytoplasmic portion of a sensor histidine kinase protein |
Matching Structure (courtesy of the PDB): |
|
