YRC Public Data Repository - Protein Structure Prediction

Protein:	YEGL_ECOLI
Organism:	Escherichia coli
Length:	219 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YEGL_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|45827653, gi\|... - gi\|47087209\|ref\|NP_998714.1\| matrilin 4 [Danio rerio], gi\|45827653\|gb\|AAS78465.1\| matrilin-4-like pr...	155.0	[0..1]	[216..573]
gi\|237704530, gi... - gi\|237704530\|ref\|ZP_04535011.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22690... gi\|91072935, gi\|... - gi\|91211361\|ref\|YP_541347.1\| hypothetical protein UTI89_C2348 [Escherichia coli UTI89], gi\|91072935\|... gi\|218365722, gi... - gi\|218558953\|ref\|YP_002391866.1\| hypothetical protein ECS88_2172 [Escherichia coli S88], gi\|21836572... gi\|115513393, gi... - gi\|117624269\|ref\|YP_853182.1\| hypothetical protein APECO1_1163 [Escherichia coli APEC O1], gi\|115513...	152.0	[0..1]	[219..1]
gi\|190909521, gi... - gi\|75242895\|ref\|ZP_00726601.1\| COG4245: Uncharacterized protein encoded in toxicity protection regio...	152.0	[0..1]	[219..1]
gi\|191168866, gi... - gi\|75227901\|ref\|ZP_00714605.1\| COG4245: Uncharacterized protein encoded in toxicity protection regio... gi\|75209998, gi\|... - gi\|75209998\|ref\|ZP_00710181.1\| COG4245: Uncharacterized protein encoded in toxicity protection regio... gi\|168986397 - gi\|168986397\|dbj\|BAG11936.1\| conserved predicted protein [Escherichia coli O55:H7] gi\|75259210, gi\|... - gi\|75259210\|ref\|ZP_00730558.1\| COG4245: Uncharacterized protein encoded in toxicity protection regio...	152.0	[0..1]	[219..1]
gi\|194436063, gi... - gi\|83588065\|ref\|ZP_00926690.1\| COG4245: Uncharacterized protein encoded in toxicity protection regio... gi\|254288852, gi... - gi\|254288852\|ref\|YP_003054600.1\| hypothetical protein ECD_01978 [Escherichia coli BL21(DE3)], gi\|253... gi\|251785450, gi... - gi\|251785450\|ref\|YP_002999754.1\| hypothetical protein B21_01967 [Escherichia coli BL21], gi\|24237772... gi\|168986340 - gi\|168986340\|dbj\|BAG11880.1\| predicted protein [Escherichia coli O55:H7] gi\|254162064, gi... - gi\|254162064\|ref\|YP_003045172.1\| hypothetical protein ECB_01978 [Escherichia coli B str. REL606], gi...	151.0	[0..1]	[219..1]
gi\|218361408, gi... - gi\|218554640\|ref\|YP_002387553.1\| hypothetical protein ECIAI1_2149 [Escherichia coli IAI1], gi\|218361... gi\|82543447, gi\|... - gi\|82543447\|ref\|YP_407394.1\| hypothetical protein SBO_0899 [Shigella boydii Sb227], gi\|81244858\|gb\|A... gi\|75236268, gi\|... - gi\|75236268\|ref\|ZP_00720377.1\| COG4245: Uncharacterized protein encoded in toxicity protection regio... gi\|73856074, gi\|... - gi\|74312597\|ref\|YP_311016.1\| hypothetical protein SSON_2125 [Shigella sonnei Ss046], gi\|73856074\|gb\|...	151.0	[0..1]	[219..1]

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Predicted Domain #1

Region A:
Residues: [1-219]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEQITFATS DFASNPEPRC PCILLLDVSG SMNGRPINEL NAGLVTFRDE LLADPLALKR  60
   61 VELGIVTFGP VHVEQPFTSA ANFFPPILFA QGDTPMGAAI TKALDMVEER KREYRANGIS 120
  121 YYRPWIFLIT DGAPTDEWQA AANKVFRGEE DKRFAFFSIG VQGADMKTLA QISVRQPLPL 180
  181 QGLQFRELFS WLSSSLRSVS RSTPGTEVVL EAPKGWTSV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	25.39794
Match:	1mf7A
Description:	Integrin alpha M (CR3, CD11b/CD18, Mac-1 alpha subunit)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.0650247416983729	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: