YRC Public Data Repository - Protein Structure Prediction

Protein:	YDIA_ECOLI
Organism:	Escherichia coli
Length:	277 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YDIA_ECOLI.

Description	E-value	Query Range	Subject Range
PSRP_SHIB3 - Phosphoenolpyruvate synthase regulatory protein OS=Shigella boydii serotype 18 (strain CDC 3083-94 /... PSRP_SHIBS - Phosphoenolpyruvate synthase regulatory protein OS=Shigella boydii serotype 4 (strain Sb227) GN=ppsR...	398.0	[0..1]	[277..1]
PSRP_ECOL5 - Phosphoenolpyruvate synthase regulatory protein OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) G... gi\|191171707, gi... - gi\|191171707\|ref\|ZP_03033254.1\| conserved hypothetical protein [Escherichia coli F11], gi\|190908037\|...	398.0	[0..1]	[277..1]
gi\|197263426, gi... - gi\|197263426\|ref\|ZP_03163500.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... PSRP_SALA4 - Phosphoenolpyruvate synthase regulatory protein OS=Salmonella agona (strain SL483) GN=ppsR PE=3 SV=1 PSRP_SALDC - Phosphoenolpyruvate synthase regulatory protein OS=Salmonella dublin (strain CT_02021853) GN=ppsR PE... PSRP_SALPK - Phosphoenolpyruvate synthase regulatory protein OS=Salmonella paratyphi A (strain AKU_12601) GN=ppsR... gi\|29137321, gi\|... - gi\|29141693\|ref\|NP_805035.1\| hypothetical protein t1229 [Salmonella enterica subsp. enterica serovar... PSRP_SALHS - Phosphoenolpyruvate synthase regulatory protein OS=Salmonella heidelberg (strain SL476) GN=ppsR PE=3... gi\|16760546 - gi\|16760546\|ref\|NP_456163.1\| hypothetical protein STY1762 [Salmonella enterica subsp. enterica serov... PSRP_SALNS - Phosphoenolpyruvate synthase regulatory protein OS=Salmonella newport (strain SL254) GN=ppsR PE=3 SV... PSRP_SALTI - Phosphoenolpyruvate synthase regulatory protein OS=Salmonella typhi GN=ppsR PE=3 SV=1 PSRP_SALSV - Phosphoenolpyruvate synthase regulatory protein OS=Salmonella schwarzengrund (strain CVM19633) GN=pp... PSRP_SALTY - Phosphoenolpyruvate synthase regulatory protein OS=Salmonella typhimurium (strain LT2 / SGSC1412 / A... gi\|194454911, gi... - gi\|194468547\|ref\|ZP_03074531.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|168263829, gi... - gi\|205347576\|gb\|EDZ34207.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... YDIA_SALTY - Putative phosphotransferase ydiA OS=Salmonella typhimurium GN=ydiA PE=3 SV=1 gi\|168240853, gi... - gi\|205339432\|gb\|EDZ26196.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|238910836 - gi\|238910836\|ref\|ZP_04654673.1\| hypothetical protein SentesTe_06832 [Salmonella enterica subsp. ente... YDIA_SALCH - Putative phosphotransferase ydiA OS=Salmonella choleraesuis GN=ydiA PE=3 SV=1 gi\|205341325, gi... - gi\|205341325\|gb\|EDZ28089.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|195634187, gi... - gi\|195634187\|gb\|EDX52539.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|205327733, gi... - gi\|205327733\|gb\|EDZ14497.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... YDIA_SALCH - Putative phosphotransferase ydiA OS=Salmonella choleraesuis GN=ydiA PE=3 SV=1 gi\|205323523, gi... - gi\|205323523\|gb\|EDZ11362.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... YDIA_SALTY - Putative phosphotransferase ydiA OS=Salmonella typhimurium GN=ydiA PE=3 SV=1 YDIA_SALPA - Putative phosphotransferase ydiA OS=Salmonella paratyphi A GN=ydiA PE=3 SV=1 gi\|197287778, gi... - gi\|197287778\|gb\|EDY27168.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... YDIA_SALTI - Putative phosphotransferase ydiA OS=Salmonella typhi GN=ydiA PE=3 SV=1 gi\|168233534, gi... - gi\|205332345\|gb\|EDZ19109.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... PSRP_SALPC - Phosphoenolpyruvate synthase regulatory protein OS=Salmonella paratyphi C (strain RKS4594) GN=ppsR P... gi\|213646717 - gi\|213646717\|ref\|ZP_03376770.1\| hypothetical protein SentesTy_04990 [Salmonella enterica subsp. ente... gi\|213615820 - gi\|213615820\|ref\|ZP_03371646.1\| hypothetical protein SentesTyp_15634 [Salmonella enterica subsp. ent... gi\|214001043 - gi\|214001043\|ref\|ZP_03411778.1\| hypothetical protein Salmonellentericaenterica_11095 [Salmonella ent... gi\|213974752 - gi\|213974752\|ref\|ZP_03402011.1\| hypothetical protein Salmonellaentericaenterica_09233 [Salmonella en... PSRP_SALEP - Phosphoenolpyruvate synthase regulatory protein OS=Salmonella enteritidis PT4 (strain P125109) GN=pp... PSRP_SALPB - Phosphoenolpyruvate synthase regulatory protein OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SP... gi\|204927746, gi... - gi\|204927746\|ref\|ZP_03218947.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|213581766 - gi\|213581766\|ref\|ZP_03363592.1\| hypothetical protein SentesTyph_11409 [Salmonella enterica subsp. en... gi\|213428581 - gi\|213428581\|ref\|ZP_03361331.1\| hypothetical protein SentesTyphi_25476 [Salmonella enterica subsp. e... PSRP_SALCH - Phosphoenolpyruvate synthase regulatory protein OS=Salmonella choleraesuis (strain SC-B67) GN=ppsR P... PSRP_SALPA - Phosphoenolpyruvate synthase regulatory protein OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42... YDIA_SALPB - Putative phosphotransferase ydiA OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=ydiA PE=... lcl\|NC_016856.1_... - [gene=ydiA] [protein=hypothetical protein] [protein_id=YP_005237212.1] [location=complement(1436576....	395.0	[0..1]	[277..1]
PSRP_CUPPJ - Putative phosphoenolpyruvate synthase regulatory protein OS=Cupriavidus pinatubonensis (strain JMP 1...	392.0	[0..2]	[277..28]
gi\|238796344, gi... - gi\|77962204\|ref\|ZP_00826027.1\| COG1806: Uncharacterized protein conserved in bacteria [Yersinia moll...	391.0	[0..5]	[277..1]
PSRP_ENTAG - Putative phosphoenolpyruvate synthase regulatory protein OS=Enterobacter agglomerans GN=ydiA PE=3 SV...	390.0	[0..3]	[277..16]
PSRP_PECAS - Putative phosphoenolpyruvate synthase regulatory protein OS=Pectobacterium atrosepticum (strain SCRI... Y1852_ERWCT - Putative phosphotransferase ECA1852 OS=Erwinia carotovora subsp. atroseptica GN=ECA1852 PE=3 SV=1	389.0	[0..5]	[277..1]
PSRP_ACISJ - Putative phosphoenolpyruvate synthase regulatory protein OS=Acidovorax sp. (strain JS42) GN=Ajs_2880... PSRP_ACIET - Putative phosphoenolpyruvate synthase regulatory protein OS=Acidovorax ebreus (strain TPSY) GN=Dtpsy...	387.0	[0..1]	[277..1]
gi\|238782556, gi... - gi\|77959213\|ref\|ZP_00823235.1\| COG1806: Uncharacterized protein conserved in bacteria [Yersinia berc...	385.0	[0..10]	[277..2]
gi\|149365680, gi... - gi\|149365680\|ref\|ZP_01887715.1\| hypothetical protein YPE_0849 [Yersinia pestis CA88-4125], gi\|149292... gi\|166210659, gi... - gi\|166210659\|ref\|ZP_02236694.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... PSRP_YERPP - Putative phosphoenolpyruvate synthase regulatory protein OS=Yersinia pestis (strain Pestoides F) GN=... gi\|167049618, gi... - gi\|167400765\|ref\|ZP_02306271.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|45441988, gi\|... - gi\|45441988\|ref\|NP_993527.1\| hypothetical protein YP_2197 [Yersinia pestis biovar Microtus str. 9100... gi\|167422120, gi... - gi\|167422120\|ref\|ZP_02313873.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st... gi\|21958749, gi\|... - gi\|22125821\|ref\|NP_669244.1\| hypothetical protein y1929 [Yersinia pestis KIM], gi\|21958749\|gb\|AAM854... gi\|167424967, gi... - gi\|167424967\|ref\|ZP_02316720.1\| conserved hypothetical protein [Yersinia pestis biovar Mediaevalis s... gi\|115348111, gi... - gi\|218929500\|ref\|YP_002347375.1\| hypothetical protein YPO2410 [Yersinia pestis CO92], gi\|16122632\|re... gi\|167469407 - gi\|167469407\|ref\|ZP_02334111.1\| hypothetical protein YpesF_16304 [Yersinia pestis FV-1] PSRP_YERPS - Putative phosphoenolpyruvate synthase regulatory protein OS=Yersinia pseudotuberculosis serotype I (... PSRP_YERPY - Putative phosphoenolpyruvate synthase regulatory protein OS=Yersinia pseudotuberculosis serotype O:3... PSRP_YERPB - Putative phosphoenolpyruvate synthase regulatory protein OS=Yersinia pseudotuberculosis serotype IB ... gi\|229688043, gi... - gi\|229898495\|ref\|ZP_04513640.1\| conserved protein [Yersinia pestis biovar Orientalis str. India 195]... gi\|229895094, gi... - gi\|229895094\|ref\|ZP_04510270.1\| conserved protein [Yersinia pestis Pestoides A], gi\|229701856\|gb\|EEO... gi\|229837934, gi... - gi\|229837934\|ref\|ZP_04458093.1\| conserved protein [Yersinia pestis biovar Orientalis str. PEXU2], gi... gi\|165927531, gi... - gi\|165927531\|ref\|ZP_02223363.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st... Y2319_YERPS - Putative phosphotransferase YPTB2319 OS=Yersinia pseudotuberculosis GN=YPTB2319 PE=3 SV=1 gi\|166011818, gi... - gi\|166011818\|ref\|ZP_02232716.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... PSRP_YERPE - Putative phosphoenolpyruvate synthase regulatory protein OS=Yersinia pestis GN=YPO2410 PE=3 SV=1 PSRP_YERP3 - Putative phosphoenolpyruvate synthase regulatory protein OS=Yersinia pseudotuberculosis serotype O:1... gi\|89105358, gi\|... - gi\|89105358\|ref\|ZP_01177879.1\| COG1806: Uncharacterized protein conserved in bacteria [Yersinia pest... PSRP_YERPA - Putative phosphoenolpyruvate synthase regulatory protein OS=Yersinia pestis bv. Antiqua (strain Anti... PSRP_YERPN - Putative phosphoenolpyruvate synthase regulatory protein OS=Yersinia pestis bv. Antiqua (strain Nepa...	385.0	[0..5]	[277..1]

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Predicted Domain #1

Region A:
Residues: [1-138]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDNAVDRHVF YISDGTAITA EVLGHAVMSQ FPVTISSITL PFVENESRAR AVKDQIDAIY  60
   61 HQTGVRPLVF YSIVLPEIRA IILQSEGFCQ DIVQALVAPL QQEMKLDPTP IAHRTHGLNP 120
  121 NNLNKYDARI AAIDYTLA

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	23.356547
Match:	PF03618.5
Description:	No description for PF03618.5 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.943	0.000	ATP binding	c.78.2	Aspartate/glutamate racemase

Predicted Domain #2

Region A:
Residues: [139-277]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HDDGISLRNL DQAQVILLGV SRCGKTPTSL YLAMQFGIRA ANYPFIADDM DNLVLPASLK  60
   61 PLQHKLFGLT IDPERLAAIR EERRENSRYA SLRQCRMEVA EVEALYRKNQ IPWINSTNYS 120
  121 VEEIATKILD IMGLSRRMY

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.3
Match:	2iyqA
Description:	No description for 2iyqA was found.

Predicted functions:

Term	Confidence	Notes
binding	0.301700930786307	bayes_pls_golite062009
catalytic activity	0.176212702885001	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: