YRC Public Data Repository - Protein Structure Prediction

Protein:	YDFH_ECOLI
Organism:	Escherichia coli
Length:	228 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YDFH_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|145952363, gi... - gi\|90572724\|ref\|ZP_01229248.1\| hypothetical protein CdifQ_02003925 [Clostridium difficile QCD-32g58]...	185.0	[0..3]	[216..8]
gi\|71038692, gi\|... - gi\|71065707\|ref\|YP_264434.1\| GntR family transcriptional regulator [Psychrobacter arcticus 273-4], g...	185.0	[0..12]	[224..8]
gi\|166853499, gi... - gi\|167039259\|ref\|YP_001662244.1\| GntR family transcriptional regulator [Thermoanaerobacter sp. X514]...	182.0	[0..1]	[219..1]
gi\|82400647, gi\|... - gi\|82501357\|ref\|ZP_00886701.1\| regulatory protein GntR, HTH [Caldicellulosiruptor saccharolyticus DS...	181.0	[0..8]	[216..11]
gi\|115252628, gi... - gi\|126701191\|ref\|YP_001090088.1\| GntR family transcriptional regulator [Clostridium difficile 630], ...	181.0	[0..7]	[216..1]
gi\|76588458, gi\|... - gi\|76796188\|ref\|ZP_00778555.1\| regulatory protein GntR, HTH:GntR, C-terminal [Thermoanaerobacter eth...	180.0	[0..1]	[219..1]
gi\|158319338, gi... - gi\|158319338\|ref\|YP_001511845.1\| GntR family transcriptional regulator [Alkaliphilus oremlandii OhIL...	176.0	[0..4]	[223..6]
gi\|146399671, gi... - gi\|88934049\|ref\|ZP_01139693.1\| regulatory protein GntR, HTH [Geobacter uraniumreducens Rf4], gi\|8891...	175.0	[0..3]	[216..1]
gi\|11494139 - gi\|11494139\|gb\|AAG35774.1\|AF209728_1 transcriptional repressor MdcY [Acinetobacter calcoaceticus]	174.0	[0..12]	[207..8]
gi\|78506397, gi\|... - gi\|78685899\|ref\|ZP_00850673.1\| regulatory protein GntR, HTH [Shewanella sp. ANA-3], gi\|78506397\|gb\|E...	174.0	[0..9]	[228..36]

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Predicted Domain #1

Region A:
Residues: [1-228]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTVETQLNPT QPVNQQIYRI LRRDIVHCLI APGTPLSEKE VSVRFNVSRQ PVREAFIKLA  60
   61 ENGLIQIRPQ RGSYVNKISM AQVRNGSFIR QAIECAVARR AASMITESQC YQLEQNLHQQ 120
  121 RIAIERKQLD DFFELDDNFH QLLTQIADCQ LAWDTIENLK ATVDRVRYMS FDHVSPPEML 180
  181 LRQHLDIFSA LQKRDGDAVE RAMTQHLQEI SESVRQIRQE NSDWFSEE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	25.39794
Match:	2hs5A
Description:	No description for 2hs5A was found.

Predicted functions:

Term	Confidence	Notes
transcription regulator activity	2.56369131794526	bayes_pls_golite062009
nucleic acid binding	1.49794573374102	bayes_pls_golite062009
DNA binding	1.47042497151354	bayes_pls_golite062009
transcription factor activity	1.32068126067873	bayes_pls_golite062009
binding	0.905540801797993	bayes_pls_golite062009
sequence-specific DNA binding	0.53285802828572	bayes_pls_golite062009
protein binding	0.035220363090062	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: